Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   STAVA116_RS07075 Genome accession   NZ_CP065498
Coordinates   1371618..1372349 (-) Length   243 a.a.
NCBI ID   WP_002947523.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA116     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1366618..1377349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS07050 (STAVA116_07015) - 1367667..1368848 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  STAVA116_RS07060 (STAVA116_07025) trmB 1369084..1369725 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  STAVA116_RS07065 (STAVA116_07030) - 1369735..1370526 (-) 792 WP_002951667.1 phosphotransferase family protein -
  STAVA116_RS07070 (STAVA116_07035) pptB 1370584..1371621 (-) 1038 WP_087010122.1 ABC transporter permease Regulator
  STAVA116_RS07075 (STAVA116_07040) pptA 1371618..1372349 (-) 732 WP_002947523.1 ABC transporter ATP-binding protein Regulator
  STAVA116_RS07080 (STAVA116_07045) - 1372414..1372833 (+) 420 WP_002891660.1 HIT family protein -
  STAVA116_RS07085 (STAVA116_07050) - 1372830..1373138 (+) 309 WP_087010123.1 hypothetical protein -
  STAVA116_RS07090 - 1373690..1373911 (-) 222 WP_087010124.1 hypothetical protein -
  STAVA116_RS07095 (STAVA116_07060) - 1373930..1374565 (-) 636 WP_087010125.1 DUF4230 domain-containing protein -
  STAVA116_RS07100 - 1374584..1374709 (-) 126 WP_347229859.1 hypothetical protein -
  STAVA116_RS07105 (STAVA116_07065) - 1375120..1377219 (-) 2100 WP_141326678.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26760.94 Da        Isoelectric Point: 4.3974

>NTDB_id=511151 STAVA116_RS07075 WP_002947523.1 1371618..1372349(-) (pptA) [Streptococcus thermophilus strain AVA116]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELSQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=511151 STAVA116_RS07075 WP_002947523.1 1371618..1372349(-) (pptA) [Streptococcus thermophilus strain AVA116]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTAGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

99.588

100

0.996
  pptA Streptococcus salivarius strain HSISS4

96.708

100

0.967