Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   STAVA116_RS06835 Genome accession   NZ_CP065498
Coordinates   1326579..1327274 (-) Length   231 a.a.
NCBI ID   WP_082309090.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA116     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1321579..1332274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS06820 (STAVA116_06790) - 1322390..1322935 (-) 546 WP_087010097.1 GNAT family N-acetyltransferase -
  STAVA116_RS06825 (STAVA116_06795) - 1323001..1324263 (-) 1263 WP_022096991.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  STAVA116_RS06830 (STAVA116_06800) - 1324349..1326589 (-) 2241 WP_087010098.1 DNA internalization-related competence protein ComEC/Rec2 -
  STAVA116_RS06835 (STAVA116_06805) comEA 1326579..1327274 (-) 696 WP_082309090.1 helix-hairpin-helix domain-containing protein Machinery gene
  STAVA116_RS06840 (STAVA116_06810) - 1327382..1328137 (-) 756 WP_023909871.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  STAVA116_RS06845 - 1328628..1328860 (+) 233 Protein_1306 polysaccharide deacetylase family protein -
  STAVA116_RS06850 - 1328915..1329202 (+) 288 WP_087010100.1 peptidoglycan GlcNAc deacetylase -
  STAVA116_RS06855 (STAVA116_06820) - 1329252..1330016 (+) 765 WP_087010101.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  STAVA116_RS06860 (STAVA116_06825) - 1330020..1330289 (+) 270 WP_011226404.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24514.46 Da        Isoelectric Point: 4.6300

>NTDB_id=511149 STAVA116_RS06835 WP_082309090.1 1326579..1327274(-) (comEA) [Streptococcus thermophilus strain AVA116]
MKEKILAYVKDNRLFVSVIAVLMVIFCFFLWMTCGAGNSMEAETSYTDVTALSTSSSKQSSQSLSEASSQSKTEGSEKVK
SKVTVDVKGAVVNPGVYTLKAGARVTDVIQEAGGMTEDADAKSVNLAASLSDEEVIYVANKDENVSVLDQTGTGQVSDKG
GQAVSKDGKINLNTATSEQLQTISGIGAKRTEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESLYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=511149 STAVA116_RS06835 WP_082309090.1 1326579..1327274(-) (comEA) [Streptococcus thermophilus strain AVA116]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATCGTCTGTTTGTGAGTGTCATCGCTGTACTGATGGTGATTTTTTG
CTTCTTTTTATGGATGACTTGTGGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAGCTTTGTCAA
CGTCTTCATCCAAACAAAGTTCACAGTCTCTTTCTGAGGCGTCTTCCCAGTCAAAGACCGAAGGAAGTGAAAAAGTTAAG
TCAAAAGTAACGGTAGATGTTAAGGGGGCTGTGGTCAATCCAGGTGTCTATACGCTAAAGGCAGGCGCTAGGGTGACAGA
TGTCATTCAGGAAGCTGGAGGAATGACAGAAGATGCAGACGCTAAGAGTGTTAACTTAGCCGCAAGCTTGTCAGATGAAG
AGGTTATTTATGTAGCCAATAAAGATGAAAATGTTTCTGTCCTTGATCAAACAGGTACTGGTCAGGTCTCTGACAAAGGA
GGGCAGGCTGTATCTAAGGATGGCAAAATTAACTTAAATACAGCAACCTCAGAGCAGTTGCAAACCATTTCTGGAATTGG
AGCTAAGCGGACAGAGGATATCATTGCCTATCGTGAAAGTCATGGCGGCTTTCAGTCCGTAGATGACTTGAAAAATGTCT
CAGGAATTGGTGATAAAACATTAGATAAAATCAGAGAGTCCCTCTATGTGGCTTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(85-138)

Helix-hairpin-helix motif (HHH_3)

(167-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

99.134

100

0.991
  comEA/celA/cilE Streptococcus mitis SK321

40.611

99.134

0.403
  comEA/celA/cilE Streptococcus pneumoniae D39

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae R6

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae Rx1

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus mitis NCTC 12261

37.719

98.701

0.372