Detailed information NTG0511139

Bioinformatically predicted

Overview

• Name: endA
• Type: Machinery gene
• Locus tag: STAVA116_RS05160
• Genome accession: NZ_CP065498
• Coordinates: 992130..993011 (-)
• Length: 293 a.a.
• NCBI ID: WP_087009970.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain AVA116
• Function: cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 987130..998011

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STAVA116_RS05135 (STAVA116_05105)	vicR	987836..988543 (-)	708	WP_011227274.1	response regulator YycF	Regulator
STAVA116_RS05140 (STAVA116_05110)	-	989069..989836 (+)	768	WP_011227275.1	amino acid ABC transporter ATP-binding protein	-
STAVA116_RS05145 (STAVA116_05115)	-	989848..990681 (+)	834	WP_087009968.1	transporter substrate-binding domain-containing protein	-
STAVA116_RS05150 (STAVA116_05120)	-	990699..991397 (+)	699	WP_087009969.1	amino acid ABC transporter permease	-
STAVA116_RS05155 (STAVA116_05125)	-	991409..992059 (+)	651	WP_011226088.1	amino acid ABC transporter permease	-
STAVA116_RS05160 (STAVA116_05130)	endA	992130..993011 (-)	882	WP_087009970.1	DNA/RNA non-specific endonuclease	Machinery gene
STAVA116_RS05165 (STAVA116_05135)	-	993073..993261 (-)	189	WP_011226090.1	DNA-directed RNA polymerase subunit beta	-
STAVA116_RS05170 (STAVA116_05140)	murA	993263..994534 (-)	1272	WP_041827046.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
STAVA116_RS05175 (STAVA116_05145)	-	994604..994840 (-)	237	WP_002946959.1	DUF1146 family protein	-
STAVA116_RS05180 (STAVA116_05150)	galE	995028..996041 (-)	1014	WP_087009971.1	UDP-glucose 4-epimerase GalE	-
STAVA116_RS05185	-	996056..996259 (-)	204	WP_011226092.1	hypothetical protein	-
STAVA116_RS05190	-	996346..996510 (-)	165	WP_231906154.1	hypothetical protein	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31757.55 Da
• Isoelectric Point: 10.2316

>NTDB_id=511139 STAVA116_RS05160 WP_087009970.1 992130..993011(-) (endA) [Streptococcus thermophilus strain AVA116]
MAKRKTSLKNKQKRQLVTLIIAALIAVLGYLGTSNKLSPDSPIRQVASLVAGKSNKSIKSNGSTNSQSTPQEQLAETVMT
SSVKSQLGNSLEWNGAGAYIINRNKTNLNAKVSSQPYANNQVKTVQGQTVPTVANALLSKATRQYKNRQETGNGSTSWTP
AGWHQVQNLSGEYSHAVDRGHLLGYALIGGLKGFDASTSNPENIAVQTAWANQAYSDSSTGQNYYESLVRKALDKNKRVR
YRVTLIYEGENLIPSGTHLEAKSADGSLEFNVFVPNVQEGITLDYYSGKVTVN

Nucleotide

• Length: 882 bp

>NTDB_id=511139 STAVA116_RS05160 WP_087009970.1 992130..993011(-) (endA) [Streptococcus thermophilus strain AVA116]
ATGGCAAAAAGAAAGACATCTTTGAAAAATAAACAGAAACGTCAGTTAGTCACATTAATAATAGCAGCTTTGATAGCTGT
TTTAGGTTACCTAGGAACCAGTAACAAGCTCTCGCCTGATAGTCCTATCAGACAAGTAGCAAGCCTAGTTGCAGGTAAAT
CTAACAAATCCATTAAATCTAATGGTTCAACAAATAGTCAGTCTACACCACAAGAGCAGCTTGCTGAGACAGTAATGACT
AGTTCAGTCAAAAGCCAACTGGGTAATTCCTTGGAATGGAATGGAGCTGGGGCCTACATTATTAATAGAAATAAGACGAA
TCTAAATGCTAAGGTATCAAGCCAACCCTATGCTAATAACCAAGTCAAAACGGTTCAAGGACAAACTGTTCCTACAGTTG
CTAATGCCTTATTAAGTAAAGCAACTAGACAGTACAAAAATCGTCAAGAAACAGGGAATGGTTCAACCTCTTGGACACCA
GCTGGATGGCACCAGGTTCAAAATTTATCAGGAGAGTATAGCCATGCCGTAGATAGAGGCCATTTGCTAGGTTATGCACT
GATAGGTGGTTTGAAAGGATTTGATGCCTCGACTTCAAATCCAGAGAATATTGCTGTTCAAACTGCTTGGGCAAATCAAG
CATATAGCGATAGTTCTACAGGCCAAAACTATTATGAAAGCCTAGTACGAAAAGCTCTGGATAAAAACAAACGTGTTCGT
TATCGTGTGACCCTGATTTATGAAGGAGAGAATCTCATTCCATCAGGAACACATCTTGAAGCTAAGTCAGCAGACGGCTC
ACTTGAGTTTAATGTCTTTGTTCCAAATGTACAAGAGGGAATTACACTAGATTACTATTCAGGAAAAGTAACGGTGAATT
GA

Domains

Predicted by InterproScan.

• DNA/RNA non-specific endonuclease (Endonuclease_NS) (101-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
endA	Streptococcus pneumoniae Rx1	72.803	81.57	0.594
endA	Streptococcus pneumoniae D39	72.803	81.57	0.594
endA	Streptococcus pneumoniae R6	72.803	81.57	0.594
endA	Streptococcus pneumoniae TIGR4	72.803	81.57	0.594