Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   STAVA116_RS05125 Genome accession   NZ_CP065498
Coordinates   985685..986497 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus strain AVA116     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 980685..991497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS05100 (STAVA116_05070) - 981621..982007 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  STAVA116_RS05105 (STAVA116_05075) - 982065..982979 (-) 915 Protein_962 GNAT family N-acetyltransferase -
  STAVA116_RS05110 (STAVA116_05080) yidA 983187..983996 (+) 810 WP_011226081.1 sugar-phosphatase -
  STAVA116_RS05115 (STAVA116_05085) - 983998..985212 (+) 1215 WP_087009967.1 aminoacyltransferase -
  STAVA116_RS05120 (STAVA116_05090) - 985264..985625 (-) 362 Protein_965 YbaN family protein -
  STAVA116_RS05125 (STAVA116_05095) vicX 985685..986497 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  STAVA116_RS05130 (STAVA116_05100) vicK 986503..987843 (-) 1341 WP_011227273.1 cell wall metabolism sensor histidine kinase VicK Regulator
  STAVA116_RS05135 (STAVA116_05105) vicR 987836..988543 (-) 708 WP_011227274.1 response regulator YycF Regulator
  STAVA116_RS05140 (STAVA116_05110) - 989069..989836 (+) 768 WP_011227275.1 amino acid ABC transporter ATP-binding protein -
  STAVA116_RS05145 (STAVA116_05115) - 989848..990681 (+) 834 WP_087009968.1 transporter substrate-binding domain-containing protein -
  STAVA116_RS05150 (STAVA116_05120) - 990699..991397 (+) 699 WP_087009969.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=511136 STAVA116_RS05125 WP_011681204.1 985685..986497(-) (vicX) [Streptococcus thermophilus strain AVA116]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=511136 STAVA116_RS05125 WP_011681204.1 985685..986497(-) (vicX) [Streptococcus thermophilus strain AVA116]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGTGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774