Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   STAVA116_RS03520 Genome accession   NZ_CP065498
Coordinates   663076..663369 (+) Length   97 a.a.
NCBI ID   WP_087009817.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA116     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 658076..668369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS03505 (STAVA116_03470) - 658619..661297 (+) 2679 WP_087009815.1 DUF4062 domain-containing protein -
  STAVA116_RS03510 (STAVA116_03475) - 661290..662558 (+) 1269 WP_157659032.1 restriction endonuclease subunit S -
  STAVA116_RS03515 (STAVA116_03480) - 662722..663086 (+) 365 Protein_644 type II toxin-antitoxin system RelE/ParE family toxin -
  STAVA116_RS03520 (STAVA116_03485) HI0659 663076..663369 (+) 294 WP_087009817.1 helix-turn-helix transcriptional regulator Machinery gene
  STAVA116_RS03525 (STAVA116_03490) - 663391..664992 (+) 1602 WP_087009818.1 type I restriction-modification system subunit M -
  STAVA116_RS03530 - 665110..665487 (+) 378 Protein_647 PD-(D/E)XK nuclease family transposase -
  STAVA116_RS03535 (STAVA116_03500) - 665585..666589 (+) 1005 WP_087009819.1 DNA/RNA non-specific endonuclease -
  STAVA116_RS03540 (STAVA116_03505) - 666740..667300 (+) 561 WP_087009820.1 LemA family protein -
  STAVA116_RS03545 (STAVA116_03510) htpX 667302..668201 (+) 900 WP_087009821.1 zinc metalloprotease HtpX -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10758.49 Da        Isoelectric Point: 5.8962

>NTDB_id=511133 STAVA116_RS03520 WP_087009817.1 663076..663369(+) (HI0659) [Streptococcus thermophilus strain AVA116]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQERV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=511133 STAVA116_RS03520 WP_087009817.1 663076..663369(+) (HI0659) [Streptococcus thermophilus strain AVA116]
ATGAAGAATAGTGCCATCGGTAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TTTACGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGACACGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGATACAGTTTTGAAAGTCTTA
GCTAGTCTGGGCAAGACTCTCGCTGTCGTCCCACTGGAACAAGAAAGGGTCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567