Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STAVA116_RS02165 Genome accession   NZ_CP065498
Coordinates   402904..403347 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA116     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 397904..408347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS02145 (STAVA116_02160) - 398469..399221 (-) 753 WP_087009712.1 NUDIX hydrolase -
  STAVA116_RS02150 (STAVA116_02165) - 399285..400391 (-) 1107 WP_087009713.1 AAA family ATPase -
  STAVA116_RS02155 (STAVA116_02170) gdhA 400735..402087 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STAVA116_RS02160 (STAVA116_02175) - 402344..402754 (+) 411 WP_087009714.1 peptide deformylase -
  STAVA116_RS02165 (STAVA116_02180) rcrR 402904..403347 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  STAVA116_RS02170 (STAVA116_02185) rcrP 403351..405165 (+) 1815 WP_087009715.1 ABC transporter ATP-binding protein Regulator
  STAVA116_RS02175 (STAVA116_02190) rcrQ 405155..406933 (+) 1779 WP_087009716.1 ABC transporter ATP-binding protein Regulator
  STAVA116_RS02180 (STAVA116_02195) - 407089..407460 (+) 372 WP_224103327.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=511124 STAVA116_RS02165 WP_002945408.1 402904..403347(+) (rcrR) [Streptococcus thermophilus strain AVA116]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=511124 STAVA116_RS02165 WP_002945408.1 402904..403347(+) (rcrR) [Streptococcus thermophilus strain AVA116]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAATAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537