Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ST4067_RS08740 Genome accession   NZ_CP065496
Coordinates   1681150..1682106 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain 4067     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1676150..1687106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4067_RS08710 (ST4067_08725) proC 1676705..1677475 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  ST4067_RS08715 (ST4067_08730) - 1677505..1678167 (-) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  ST4067_RS08720 (ST4067_08735) - 1678270..1678713 (-) 444 WP_011681680.1 hypothetical protein -
  ST4067_RS08725 - 1678787..1679212 (-) 426 WP_263604536.1 CPBP family intramembrane glutamic endopeptidase -
  ST4067_RS08730 (ST4067_08745) - 1679455..1679652 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  ST4067_RS08735 (ST4067_08750) - 1679901..1681094 (-) 1194 WP_014608740.1 acetate kinase -
  ST4067_RS08740 (ST4067_08755) comYH 1681150..1682106 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  ST4067_RS08745 (ST4067_08760) comGG 1682151..1682468 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  ST4067_RS08750 (ST4067_08765) comYF 1682446..1682883 (-) 438 WP_263604537.1 competence type IV pilus minor pilin ComGF Machinery gene
  ST4067_RS08755 (ST4067_08770) comGE 1682867..1683160 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  ST4067_RS08760 (ST4067_08775) comYD 1683132..1683560 (-) 429 WP_263604538.1 competence type IV pilus minor pilin ComGD Machinery gene
  ST4067_RS08765 (ST4067_08780) comYC 1683520..1683846 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  ST4067_RS08770 (ST4067_08785) comYB 1683843..1684943 (-) 1101 WP_148148900.1 competence type IV pilus assembly protein ComGB Machinery gene
  ST4067_RS08775 (ST4067_08790) comGA/cglA/cilD 1684825..1685766 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  ST4067_RS08780 (ST4067_08795) - 1685847..1686209 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=511101 ST4067_RS08740 WP_011226622.1 1681150..1682106(-) (comYH) [Streptococcus thermophilus strain 4067]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=511101 ST4067_RS08740 WP_011226622.1 1681150..1682106(-) (comYH) [Streptococcus thermophilus strain 4067]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682