Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ST4067_RS05320 Genome accession   NZ_CP065496
Coordinates   1006022..1006834 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus strain 4067     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1001022..1011834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4067_RS05295 (ST4067_05320) - 1001958..1002344 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  ST4067_RS05300 - 1002436..1003316 (-) 881 Protein_986 GNAT family N-acetyltransferase -
  ST4067_RS05305 (ST4067_05330) yidA 1003524..1004333 (+) 810 WP_011226081.1 sugar-phosphatase -
  ST4067_RS05310 (ST4067_05335) - 1004335..1005549 (+) 1215 WP_263604381.1 aminoacyltransferase -
  ST4067_RS05315 (ST4067_05340) - 1005601..1005962 (-) 362 Protein_989 YbaN family protein -
  ST4067_RS05320 (ST4067_05345) vicX 1006022..1006834 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  ST4067_RS05325 (ST4067_05350) vicK 1006840..1008180 (-) 1341 WP_011227273.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ST4067_RS05330 (ST4067_05355) vicR 1008173..1008880 (-) 708 WP_011227274.1 response regulator YycF Regulator
  ST4067_RS05335 (ST4067_05360) - 1009424..1010191 (+) 768 WP_011227275.1 amino acid ABC transporter ATP-binding protein -
  ST4067_RS05340 (ST4067_05365) - 1010203..1011036 (+) 834 WP_011226086.1 transporter substrate-binding domain-containing protein -
  ST4067_RS05345 (ST4067_05370) - 1011054..1011752 (+) 699 WP_065973256.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=511079 ST4067_RS05320 WP_011681204.1 1006022..1006834(-) (vicX) [Streptococcus thermophilus strain 4067]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=511079 ST4067_RS05320 WP_011681204.1 1006022..1006834(-) (vicX) [Streptococcus thermophilus strain 4067]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774