Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   ST4067_RS02335 Genome accession   NZ_CP065496
Coordinates   426076..426519 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4067     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 421076..431519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4067_RS02315 (ST4067_02315) - 421598..422350 (-) 753 WP_011226910.1 NUDIX domain-containing protein -
  ST4067_RS02320 (ST4067_02320) - 422414..423520 (-) 1107 WP_263604618.1 AAA family ATPase -
  ST4067_RS02325 (ST4067_02325) gdhA 423864..425216 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  ST4067_RS02330 (ST4067_02330) - 425475..425885 (+) 411 WP_011225559.1 peptide deformylase -
  ST4067_RS02335 (ST4067_02335) rcrR 426076..426519 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  ST4067_RS02340 (ST4067_02340) rcrP 426523..428337 (+) 1815 WP_263604619.1 ABC transporter ATP-binding protein Regulator
  ST4067_RS02345 (ST4067_02345) rcrQ 428327..430105 (+) 1779 WP_164177919.1 ABC transporter ATP-binding protein Regulator
  ST4067_RS02350 (ST4067_02350) - 430260..430631 (+) 372 WP_002945426.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=511068 ST4067_RS02335 WP_002945408.1 426076..426519(+) (rcrR) [Streptococcus thermophilus strain 4067]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=511068 ST4067_RS02335 WP_002945408.1 426076..426519(+) (rcrR) [Streptococcus thermophilus strain 4067]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537