Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   STCNRZ385_RS03350 Genome accession   NZ_CP065495
Coordinates   622778..623779 (+) Length   333 a.a.
NCBI ID   WP_004197422.1    Uniprot ID   Q9L6X0
Organism   Streptococcus thermophilus strain CNRZ385     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 617778..628779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ385_RS03330 (STCNRZ385_03310) smpB 618883..619347 (+) 465 WP_002950240.1 SsrA-binding protein SmpB -
  STCNRZ385_RS03335 (STCNRZ385_03315) - 619501..620907 (+) 1407 WP_087009785.1 Cof-type HAD-IIB family hydrolase -
  STCNRZ385_RS03340 (STCNRZ385_03320) - 620909..621274 (+) 366 WP_002950243.1 S1 RNA-binding domain-containing protein -
  STCNRZ385_RS03345 (STCNRZ385_03325) - 621377..622462 (-) 1086 WP_011225703.1 Xaa-Pro peptidase family protein -
  STCNRZ385_RS03350 (STCNRZ385_03330) ccpA 622778..623779 (+) 1002 WP_004197422.1 catabolite control protein A Regulator
  STCNRZ385_RS03355 (STCNRZ385_03335) - 623839..624006 (+) 168 WP_014621359.1 hypothetical protein -
  STCNRZ385_RS03360 (STCNRZ385_03340) - 624142..624906 (+) 765 WP_180483526.1 MmcQ/YjbR family DNA-binding protein -
  STCNRZ385_RS03365 (STCNRZ385_03345) - 624919..626034 (+) 1116 WP_002950249.1 glycerate kinase -
  STCNRZ385_RS03370 (STCNRZ385_03350) - 626081..626536 (-) 456 WP_180483528.1 YueI family protein -
  STCNRZ385_RS03375 (STCNRZ385_03355) eno 626745..628049 (+) 1305 WP_011225708.1 surface-displayed alpha-enolase -
  STCNRZ385_RS03380 (STCNRZ385_03360) - 628201..628385 (-) 185 Protein_595 hypothetical protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36597.53 Da        Isoelectric Point: 5.8841

>NTDB_id=511015 STCNRZ385_RS03350 WP_004197422.1 622778..623779(+) (ccpA) [Streptococcus thermophilus strain CNRZ385]
MNTDETITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIVNSYFA
TLAKGIDDIATMYKYNIVLASSDDNEDHEVTVIHSLISKQVDGIIFMGHHLTEKIRAEFSRTRTPIVLAGTVDLEHQLPS
VNIDYKAAVEDCVTQLAKNNEKVAFVSGPLIDDINGKLRLAGYKSGLEKNNLSYNEGLVFEAKYSYKDGFELAQRVLNSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPVTSYTRPNLSSINHPLYDLGAVSMRMLTKIMHKEELEDKDV
ILNHGLTLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=511015 STCNRZ385_RS03350 WP_004197422.1 622778..623779(+) (ccpA) [Streptococcus thermophilus strain CNRZ385]
ATGAATACTGATGAAACAATCACAATTTATGATGTAGCGCGTGAAGCTGGAGTATCGATGGCAACTGTTTCTCGTGTTGT
AAATGGTAACAAAAACGTAAAAGAAAACACCCGAAAAAAAGTGCTCGAAGTCATTGATCGTTTGGATTACCGTCCAAATG
CGGTTGCGCGTGGCTTGGCAAGTAAAAAAACAACTACTGTAGGAGTTGTCATTCCAAATATTGTAAATAGCTATTTTGCT
ACTCTAGCTAAAGGTATTGATGACATTGCAACCATGTATAAGTATAATATTGTTCTTGCTTCCAGTGATGATAATGAGGA
TCATGAAGTTACAGTCATTCATTCTCTAATTTCTAAACAAGTTGATGGTATTATTTTTATGGGACACCATCTGACAGAAA
AAATCCGTGCAGAATTCTCTCGTACCCGTACACCGATTGTTCTAGCAGGAACAGTTGATCTCGAACACCAATTACCAAGT
GTTAACATCGACTATAAAGCTGCCGTTGAGGATTGTGTAACGCAACTTGCTAAAAATAATGAAAAGGTTGCCTTTGTATC
AGGACCACTAATTGATGATATTAATGGCAAACTACGTTTGGCTGGGTATAAGTCTGGACTTGAAAAGAATAATTTGAGCT
ACAACGAAGGACTTGTCTTTGAAGCTAAATATAGCTATAAAGACGGCTTTGAGTTAGCACAACGTGTCTTGAACTCTGGT
GCCACTGCTGCCTATGTTGGGGAAGATGAATTGGCTGCAGGTCTCTTGAATGGCCTCTTTGCTGCAGGCAAATCAGTTCC
AGAAGATTTCGAAATCATCACAAGCAATGATTCACCGGTTACAAGCTACACACGTCCAAACCTTTCTAGTATAAACCATC
CTCTCTATGATTTAGGGGCAGTTAGCATGCGTATGTTGACTAAAATTATGCATAAGGAAGAACTTGAAGATAAAGATGTT
ATCCTTAATCATGGTCTAACTTTACGCCAATCAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q9L6X0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

76.276

100

0.763

  ccpA Streptococcus pneumoniae D39

75.375

100

0.754

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

54.985

99.399

0.547