Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   STCNRZ385_RS02325 Genome accession   NZ_CP065495
Coordinates   422563..424377 (+) Length   604 a.a.
NCBI ID   WP_180483490.1    Uniprot ID   A0AAU9HDE9
Organism   Streptococcus thermophilus strain CNRZ385     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 417563..429377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ385_RS02305 (STCNRZ385_02310) - 418350..419525 (+) 1176 WP_179971022.1 IS256-like element IS1191 family transposase -
  STCNRZ385_RS02310 (STCNRZ385_02315) gdhA 419906..421258 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STCNRZ385_RS02315 (STCNRZ385_02320) - 421516..421926 (+) 411 WP_011680804.1 peptide deformylase -
  STCNRZ385_RS02320 (STCNRZ385_02325) rcrR 422116..422559 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  STCNRZ385_RS02325 (STCNRZ385_02330) rcrP 422563..424377 (+) 1815 WP_180483490.1 ABC transporter ATP-binding protein Regulator
  STCNRZ385_RS02330 (STCNRZ385_02335) rcrQ 424367..426145 (+) 1779 WP_180483492.1 ABC transporter ATP-binding protein Regulator
  STCNRZ385_RS02335 (STCNRZ385_02340) - 426301..426672 (+) 372 WP_041829277.1 hypothetical protein -
  STCNRZ385_RS09905 - 426695..427858 (+) 1164 Protein_398 sensor histidine kinase -
  STCNRZ385_RS02345 (STCNRZ385_02350) pyrH 428094..428831 (+) 738 WP_180483494.1 UMP kinase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67176.85 Da        Isoelectric Point: 5.5886

>NTDB_id=511009 STCNRZ385_RS02325 WP_180483490.1 422563..424377(+) (rcrP) [Streptococcus thermophilus strain CNRZ385]
MFKIFKRLTAKELSMIVLAVIFVCLNVYLNLKIPDYMSDIITLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
SFLAARTASSFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQMALTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIADAMKDKVHLFSDMVVYSSYAMQVVMGFMMMMVVFFLLP
RAVVAAGRINEVLDTQSSVSYPEYSSEKPKEVGTVEFEDVSFRYSETSEPVLEHVSFKAKKGDTVALIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRYYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNSPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELAEKTQDMTKLIVAQRISTIMDA
DQILVLDRGKVVGQGTHEELLANNEVYQEIAYSQLSKEELEDGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=511009 STCNRZ385_RS02325 WP_180483490.1 422563..424377(+) (rcrP) [Streptococcus thermophilus strain CNRZ385]
ATGTTTAAAATTTTTAAACGTTTGACGGCAAAAGAGTTAAGTATGATTGTCTTAGCTGTGATATTTGTTTGTTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGACATTATAACCCTCTTATCAACCAAGGGGACTAAGGCATCGGATA
TTTTTGCTTGGAATACGGATGCCCCAGGGATGCGAATGCTTTTAATGTCTTTTGCGGGCTTTATGGCCTCTGTAGTGGTT
AGTTTTCTAGCTGCCAGAACAGCATCTAGTTTTACCACTCGTCTTCGTGATGATATCTTCCATCAGGTTTTAGATTTTTC
GGATGCCGAGATTAAGAAATTCTCTATTCCTAGTCTTTTGACCCGTACGACAAACGATATTACACAATTACAGATGGCAC
TGACCATGGGGTTACAGGTTATTACACAGGGACCTATTATGGCAATCTGGGCTATTACAAAGATTGCTGATAAAAATGGG
AATTGGCTTCTTGCCTTGCTTGTGGCTGTGGCAGTAATTGCCATTCTTATGCTCTTCCTCTTGATTATGGTCATGCCTAA
GCAACGTTTGATTCAGACTCTGACAGATAAACTCAATAGTGTGACGCGTGAATCTCTTACTGGGATTCGTGTGGTGCGTG
CCTATAACGCCGAGAGTTATCAAGAGGATAAGTTTGAAAAGGCCAATACTGATCTAACCCAAAACAATCTTTTCATCGGT
CGTTCTTTTGCCTTGCTGACACCGGTAATGACTGCTGTATCTAGTGGTTTGACGCTAGCTATTTATTGGATTGGTGCGCA
TCTGATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTGCTGATGCCATGAAAGACAAGGTTCATCTCTTCTCAG
ACATGGTGGTTTACTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATGGTTGTCTTCTTCCTTCTTCCA
CGAGCAGTTGTAGCAGCTGGACGTATCAATGAAGTTTTAGATACTCAATCTTCAGTTTCTTACCCTGAATATAGTTCTGA
AAAGCCTAAAGAAGTCGGAACTGTTGAATTTGAAGACGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGAGATACGGTTGCTCTTATTGGTTCGACTGGATCTGGTAAATCAACTCTTGTCAAC
CTTATCCCACGTTTTTACGATGCAACGCAAGGAACTATAAAGGTCGATGGTGTAGATGTGAGATATTACGATCACGAAAC
CTTGCACAATATTGTTGGTTATATCCCACAAAAGGCAGTACTTTTCTCAGGGGACATCACGTCAAATATGACGATGGGAA
CCAGCAATAACAGCCCTCTTGATGACGCTAAAATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTCAAGGCAGAAGTGGCTCAAGCTGGGTCTAACTTCTCAGGTGGTCAGAAACAACGTCTGGCTATTGC
GCGTGCACTTGCCCGTAAGCCTGAAATCTTGATCTTTGACGATTCCTTCTCAGCTTTGGACTATAAGACCGATCGCAAGT
TGCGTCAAGAATTGGCTGAAAAAACACAAGATATGACCAAGTTGATTGTTGCGCAACGCATCTCTACTATTATGGATGCT
GACCAAATCTTAGTTCTTGATAGAGGTAAGGTCGTTGGTCAAGGAACCCACGAGGAACTCTTGGCTAATAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAGATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(372-522)

ABC transporter transmembrane region (ABC_membrane)

(17-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.438

100

0.675