Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SIR_RS13670 Genome accession   NC_022246
Coordinates   784686..785756 (-) Length   356 a.a.
NCBI ID   WP_021002717.1    Uniprot ID   T1ZD16
Organism   Streptococcus intermedius B196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 779686..790756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS13650 (SIR_0767) trmFO 780002..781336 (+) 1335 WP_021002713.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  SIR_RS13655 (SIR_0768) - 781443..782267 (+) 825 WP_021002714.1 alpha/beta hydrolase -
  SIR_RS13660 (SIR_0769) - 782286..783026 (+) 741 WP_021002715.1 esterase family protein -
  SIR_RS13665 (SIR_0770) - 783054..784214 (+) 1161 WP_021002716.1 ATP-grasp domain-containing protein -
  SIR_RS13670 (SIR_0771) xerS 784686..785756 (-) 1071 WP_021002717.1 tyrosine recombinase XerS Machinery gene
  SIR_RS13675 (SIR_0772) ffh 785950..787524 (-) 1575 WP_021002718.1 signal recognition particle protein -
  SIR_RS13680 (SIR_0773) - 787585..787917 (-) 333 WP_003069097.1 putative DNA-binding protein -
  SIR_RS13685 (SIR_0774) - 788033..788731 (-) 699 WP_021002719.1 GntR family transcriptional regulator -
  SIR_RS13690 (SIR_0775) guaA 788873..790432 (+) 1560 WP_021002720.1 glutamine-hydrolyzing GMP synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41284.39 Da        Isoelectric Point: 9.7316

>NTDB_id=51098 SIR_RS13670 WP_021002717.1 784686..785756(-) (xerS) [Streptococcus intermedius B196]
MKRELLLERIEKLKTILPWYVLEYYQSKLTVPYSFTTLYEYLKEYNRFFQWILDSGIADGSQIAEIPLSVLENMTKKDME
SFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENENGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGAETEQFLNYIDEEYPKSLSNRALSSFNKNKERDLAMIALLLASGIRLSEAVNLDLKDLNLKIMVIEVTRKGGKRDS
VNIASFAKPYLERYLEIRSKRYKAEKSDTAFFLTEYRGGPNRIDASSVEKMVAKYSENFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=51098 SIR_RS13670 WP_021002717.1 784686..785756(-) (xerS) [Streptococcus intermedius B196]
ATGAAGCGTGAACTACTTTTAGAAAGAATTGAAAAACTAAAGACTATTCTACCCTGGTATGTTTTGGAATATTATCAATC
TAAATTAACTGTTCCATACAGTTTTACAACCTTATATGAATATCTTAAAGAATACAATCGTTTTTTTCAGTGGATTTTAG
ACTCTGGAATTGCTGATGGCTCACAAATTGCAGAAATTCCTTTATCGGTGTTGGAAAATATGACTAAAAAAGATATGGAA
TCATTTATCCTTTACCTACGAGAACGACCACTGCTTAATGCTAATACCACACAAAACGGAGTATCTCAAACAACTATTAA
CCGCACTCTTTCAGCTCTCTCTAGCCTTTATAAATATTTAACTGAAGAGGTGGAAAATGAGAATGGGGAGCCTTACTTTT
ACCGTAATGTTATGAAAAAAGTGTCCACTAAGAAAAAGAAAGAAACTTTAGCTGCACGAGCTGAAAATATTAAACAAAAA
CTCTTTTTAGGCGCGGAAACTGAACAATTTTTGAATTATATTGATGAAGAATATCCTAAAAGTTTATCTAACCGTGCCCT
CTCCTCTTTCAACAAAAATAAAGAGAGAGATTTGGCGATGATAGCACTACTTCTTGCATCTGGTATTCGTCTATCCGAGG
CAGTAAATCTTGATTTGAAAGACCTCAATCTAAAAATAATGGTCATTGAAGTTACTCGTAAGGGTGGGAAAAGAGATTCT
GTTAATATTGCATCTTTCGCTAAACCTTATTTAGAAAGGTATTTGGAGATTCGATCCAAACGCTATAAAGCTGAAAAATC
CGATACTGCCTTCTTTTTGACAGAATATAGAGGAGGTCCCAATCGCATTGATGCATCTAGTGTAGAAAAAATGGTTGCCA
AGTATTCTGAAAATTTTAAAGTTCGAGTGACTCCTCACAAACTCCGCCACACTCTAGCTACTAGGCTTTATGATGCGACC
AAGTCCCAGGTCCTGGTCAGCCATCAGCTAGGACATGCCAGCACTCAGGTCACTGACCTCTATACCCATATCGTTAATGA
TGAACAAAAGAATGCATTAGATAAATTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(189-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZD16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

86.798

100

0.868

Multiple sequence alignment