Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SPAF_RS01005 Genome accession   NC_017905
Coordinates   178544..179275 (+) Length   243 a.a.
NCBI ID   WP_014712707.1    Uniprot ID   I1ZJI1
Organism   Streptococcus parasanguinis FW213     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 173544..184275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS00975 (Spaf_0173) - 173939..175360 (+) 1422 WP_041826181.1 NCS2 family permease -
  SPAF_RS00980 (Spaf_0174) tsaE 175553..176008 (+) 456 WP_003018467.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SPAF_RS00985 (Spaf_0175) - 176001..176531 (+) 531 WP_041826182.1 GNAT family protein -
  SPAF_RS00990 (Spaf_0176) - 176545..177738 (+) 1194 WP_014712704.1 LCP family protein -
  SPAF_RS00995 (Spaf_0178) - 177760..178050 (-) 291 Protein_170 hypothetical protein -
  SPAF_RS01000 (Spaf_0179) - 178063..178476 (-) 414 WP_014712706.1 HIT family protein -
  SPAF_RS01005 (Spaf_0180) pptA 178544..179275 (+) 732 WP_014712707.1 ABC transporter ATP-binding protein Regulator
  SPAF_RS01010 (Spaf_0181) - 179272..180327 (+) 1056 WP_014712708.1 ABC transporter permease -
  SPAF_RS01015 (Spaf_0182) - 180368..181162 (+) 795 WP_003018442.1 phosphotransferase family protein -
  SPAF_RS01020 (Spaf_0183) trmB 181159..181794 (+) 636 WP_014712710.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SPAF_RS01025 (Spaf_0184) rimP 181892..182371 (+) 480 WP_003018457.1 ribosome maturation factor RimP -
  SPAF_RS01030 (Spaf_0185) nusA 182416..183558 (+) 1143 WP_013904736.1 transcription termination factor NusA -
  SPAF_RS01035 (Spaf_0186) - 183573..183869 (+) 297 WP_003010401.1 YlxR family protein -
  SPAF_RS01040 (Spaf_0187) - 183862..184161 (+) 300 WP_003018481.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27021.34 Da        Isoelectric Point: 4.5112

>NTDB_id=51096 SPAF_RS01005 WP_014712707.1 178544..179275(+) (pptA) [Streptococcus parasanguinis FW213]
MLEINKLTGGYVNIPVLKEVSFSVPDGQLIGLIGLNGAGKSTTINEIIGLLHPYAGEVRIDGLSLPEAPTDYRKKIGYIP
ETPSLYEELTLREHIETVAMAYDLDMDQVMVRVQPLLERFRLAEKLDWFPTQFSKGMKQKVMIICAYAVDPSLYIVDEPF
LGLDPVAIADLIQLLADEKVKGKSILMSTHVLDSAEKMCDGFVILHKGQIRAKGTLDELRSTFGDEKASLNDIYMTLTEE
ETA

Nucleotide


Download         Length: 732 bp        

>NTDB_id=51096 SPAF_RS01005 WP_014712707.1 178544..179275(+) (pptA) [Streptococcus parasanguinis FW213]
ATGTTAGAAATCAACAAGTTGACAGGGGGCTATGTCAACATCCCTGTCCTGAAAGAGGTGAGTTTTTCAGTTCCGGATGG
CCAACTGATTGGTTTGATTGGACTAAATGGAGCTGGGAAGTCAACCACGATTAATGAAATTATTGGTCTCCTGCATCCTT
ATGCTGGGGAAGTACGGATTGACGGCCTGAGCCTTCCAGAAGCTCCAACTGACTATCGTAAAAAAATCGGCTATATTCCA
GAAACCCCTAGTCTATATGAAGAATTAACCTTGAGAGAGCATATCGAGACCGTAGCTATGGCCTATGATTTAGACATGGA
TCAGGTCATGGTGCGCGTCCAGCCTTTGTTGGAACGATTTCGTTTGGCTGAAAAATTAGATTGGTTCCCGACCCAGTTTT
CAAAAGGGATGAAGCAAAAGGTTATGATTATTTGCGCCTATGCAGTGGATCCAAGTCTTTATATTGTCGATGAACCCTTT
TTGGGATTGGATCCTGTTGCGATTGCAGATTTGATTCAGTTATTGGCAGATGAGAAAGTAAAAGGAAAATCGATTTTGAT
GAGTACCCACGTTCTGGATTCGGCTGAAAAAATGTGTGATGGTTTTGTGATCCTCCATAAGGGTCAGATCCGAGCAAAAG
GGACCTTGGACGAGCTGCGTTCAACTTTTGGGGATGAGAAGGCAAGTCTAAATGATATCTATATGACCTTGACAGAAGAG
GAAACCGCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I1ZJI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.104

99.177

0.745
  pptA Streptococcus thermophilus LMD-9

75.104

99.177

0.745

Multiple sequence alignment