Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ST4021_RS03670 Genome accession   NZ_CP065493
Coordinates   688042..688335 (+) Length   97 a.a.
NCBI ID   WP_014621407.1    Uniprot ID   A0AAU9H9S0
Organism   Streptococcus thermophilus strain 4021     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 683042..693335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4021_RS03640 (ST4021_03630) - 684310..684501 (+) 192 WP_046206428.1 hypothetical protein -
  ST4021_RS03645 (ST4021_03635) - 684503..684703 (+) 201 WP_144406659.1 hypothetical protein -
  ST4021_RS03650 (ST4021_03640) - 684767..685021 (+) 255 WP_052718228.1 hypothetical protein -
  ST4021_RS03655 (ST4021_03645) - 685133..686347 (+) 1215 WP_046206429.1 ATP-binding protein -
  ST4021_RS03660 (ST4021_03650) - 686331..687521 (+) 1191 WP_046206430.1 restriction endonuclease subunit S -
  ST4021_RS03665 (ST4021_03655) - 687734..688052 (+) 319 Protein_661 type II toxin-antitoxin system RelE/ParE family toxin -
  ST4021_RS03670 (ST4021_03660) HI0659 688042..688335 (+) 294 WP_014621407.1 helix-turn-helix transcriptional regulator Machinery gene
  ST4021_RS03675 (ST4021_03665) - 688357..689958 (+) 1602 WP_046206431.1 type I restriction-modification system subunit M -
  ST4021_RS03680 - 690036..690468 (+) 433 Protein_664 PD-(D/E)XK nuclease family transposase -
  ST4021_RS03685 (ST4021_03675) - 690532..691536 (+) 1005 Protein_665 DNA/RNA non-specific endonuclease -
  ST4021_RS03690 (ST4021_03680) - 691686..692246 (+) 561 WP_011680991.1 LemA family protein -
  ST4021_RS03695 (ST4021_03685) htpX 692248..693147 (+) 900 WP_011680992.1 zinc metalloprotease HtpX -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10744.50 Da        Isoelectric Point: 5.8962

>NTDB_id=510957 ST4021_RS03670 WP_014621407.1 688042..688335(+) (HI0659) [Streptococcus thermophilus strain 4021]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKI

Nucleotide


Download         Length: 294 bp        

>NTDB_id=510957 ST4021_RS03670 WP_014621407.1 688042..688335(+) (HI0659) [Streptococcus thermophilus strain 4021]
ATGAAGAATAGTGCCATCGGCAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TTTACGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGACACGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGACACGGTTTTGAAAGTCTTA
GCCAGTCTGGGCAAGACCCTCGCTGTCGTCCCACTGGAACAAGAAAAGATCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567