Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SIR_RS12440 Genome accession   NC_022246
Coordinates   529049..531283 (+) Length   744 a.a.
NCBI ID   WP_021002564.1    Uniprot ID   T1ZCC1
Organism   Streptococcus intermedius B196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 524049..536283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS12410 (SIR_0526) - 524830..525459 (+) 630 WP_021002559.1 hypothetical protein -
  SIR_RS12415 (SIR_0527) rnz 525470..526399 (+) 930 WP_009568980.1 ribonuclease Z -
  SIR_RS12420 (SIR_0528) - 526445..527053 (+) 609 WP_021002560.1 histidine phosphatase family protein -
  SIR_RS12425 (SIR_0529) - 527063..527818 (+) 756 WP_021002561.1 SDR family NAD(P)-dependent oxidoreductase -
  SIR_RS12430 (SIR_0530) - 527828..528559 (+) 732 WP_021002562.1 class I SAM-dependent methyltransferase -
  SIR_RS12435 (SIR_0531) - 528543..528950 (+) 408 WP_021002563.1 GNAT family N-acetyltransferase -
  SIR_RS12440 (SIR_0532) recJ 529049..531283 (+) 2235 WP_021002564.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SIR_RS20160 - 531420..531742 (-) 323 Protein_506 ATP-binding cassette domain-containing protein -
  SIR_RS20015 - 531755..531969 (-) 215 Protein_507 GntR family transcriptional regulator -
  SIR_RS12455 (SIR_0533) - 532101..535202 (+) 3102 WP_021002565.1 DNA polymerase III subunit alpha -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 83578.51 Da        Isoelectric Point: 4.5319

>NTDB_id=51090 SIR_RS12440 WP_021002564.1 529049..531283(+) (recJ) [Streptococcus intermedius B196]
MITSKYDWQIATNFSDEGFIKQAQKLGLEPSVANLVYQRGIQTEEALRDFLEASLDKLHDPYELHDMEKAVTRIRQAIEN
DEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFTDGYGPNASVYKYFIDNQGISLFITVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPEELPNAYAIVHPEHSRADYPFKHLAGCGVAFKLATALLEEVQIELLDLVAIGTIADMVSLTGENR
ILVKYGLSILKSTQRIGLQELFKISGIQEDEVDEEIVGFQIAPRLNALGRLDDPNPAIELLTGFDEEEARDIALMINQKN
DERKEMVQHIYDEAKFMIDPKKPVQVLAGKGWNPGVLGIVAGRLLEELHQPIIVLNIENGLAKGSARSIEAVDIFEALDP
HRELFVAFGGHAGAAGMTLDASRLEELSQVLTAYIENNQLDLSTKNDLFLDEELALPDLTLETLKNFEKLAPFGMDNKKP
VFYLKDFKVENARIMGTGNAHLKLKISQADVAFDVIAFGQGELATEFSQTKNLELAVTLSVNKWNGQTSLQLMLVDARVN
GIQLFNIRGKNARLPENVPILRFSEEIPDLGNSRSVVVYDVPNQLEQLKMIIQQGHFEAIYFKNEIAHPYYLTGFGTRAQ
FAKLYKTIYQFPEFDIRYKLKKLAAYLNIDSILLIKMIQIFEELGFVTVQDGVMRVNKEAEKKAIESSHIYQELKKIVKE
QELMALGTVQEIYDYLMEKDECSN

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=51090 SIR_RS12440 WP_021002564.1 529049..531283(+) (recJ) [Streptococcus intermedius B196]
ATGATTACATCAAAATATGATTGGCAAATTGCTACAAATTTTTCAGATGAGGGCTTTATCAAGCAAGCTCAAAAACTCGG
CTTGGAACCTTCGGTAGCCAATTTGGTATACCAGAGAGGGATTCAGACAGAAGAAGCACTGCGAGACTTTCTAGAAGCTA
GTTTGGACAAGCTACACGATCCTTATGAACTTCATGATATGGAGAAGGCGGTGACGCGCATTCGTCAAGCGATTGAAAAT
GATGAACAAATCTTGATTTATGGAGATTACGATGCGGATGGAATGACTTCAGCTTCCATTGTTAAAGAAGCGTTAGAGCA
ACTTGGAGCAGAGTGTCAGGTCTATCTGCCCAATCGATTTACAGATGGTTATGGTCCTAACGCGAGCGTTTATAAGTATT
TTATTGATAATCAGGGTATTTCCCTCTTCATTACAGTGGATAATGGAGTTGCAGGACATGAAGCAATTGAGTTAGCCCAG
TCCATGGGAGTGGATGTCATCGTAACAGATCACCACTCTATGCCCGAGGAGCTGCCAAATGCCTATGCTATCGTCCATCC
GGAACATAGCAGAGCAGATTACCCTTTCAAGCATCTGGCTGGCTGTGGGGTGGCTTTTAAGTTAGCGACTGCCCTTTTAG
AGGAAGTGCAGATTGAGTTGTTGGATCTAGTCGCTATCGGCACTATTGCGGATATGGTCAGCTTGACAGGTGAGAATCGG
ATTTTGGTCAAATATGGCTTATCTATTTTGAAAAGCACTCAGCGCATCGGCTTGCAAGAACTTTTTAAGATTTCGGGCAT
TCAGGAAGATGAAGTAGATGAAGAAATAGTTGGTTTTCAGATAGCTCCTAGACTCAATGCTCTAGGTCGATTGGATGATC
CAAATCCTGCTATTGAACTTCTGACTGGTTTTGATGAAGAAGAAGCGCGTGACATCGCCCTGATGATTAATCAGAAAAAT
GACGAACGCAAGGAGATGGTGCAGCATATCTATGATGAAGCTAAGTTTATGATTGATCCTAAGAAGCCTGTTCAGGTTCT
AGCTGGCAAGGGTTGGAATCCAGGTGTTTTGGGAATTGTAGCAGGGCGACTTTTAGAAGAGTTGCATCAGCCGATCATCG
TGCTGAATATTGAAAATGGTTTAGCAAAAGGTAGTGCTCGCAGCATTGAAGCAGTTGATATTTTTGAAGCTCTAGATCCT
CACCGAGAGTTATTTGTAGCTTTTGGTGGGCATGCTGGGGCAGCTGGCATGACTCTTGACGCCAGTCGATTAGAAGAACT
CAGTCAGGTTTTGACGGCCTATATTGAAAATAATCAGCTGGATTTGTCTACTAAGAATGACCTTTTTTTGGATGAAGAAC
TAGCTTTGCCAGATCTGACGCTGGAAACTCTTAAAAACTTTGAAAAACTTGCTCCTTTTGGTATGGATAATAAAAAACCT
GTTTTCTATTTAAAAGATTTTAAAGTTGAAAATGCTCGTATCATGGGGACAGGAAATGCTCACCTGAAACTAAAAATTTC
TCAGGCTGATGTTGCTTTTGATGTAATAGCTTTTGGACAAGGCGAACTTGCCACAGAATTTTCTCAAACTAAAAATTTAG
AGTTAGCAGTGACTCTGTCGGTCAACAAATGGAATGGTCAGACTAGTCTGCAACTTATGTTGGTAGACGCTCGAGTCAAC
GGAATTCAGCTCTTTAATATTCGAGGTAAAAATGCTCGCTTACCTGAAAATGTACCTATTCTGCGTTTTTCAGAAGAAAT
ACCTGATTTGGGAAATAGTAGATCAGTTGTGGTCTATGACGTCCCCAATCAACTAGAACAACTAAAAATGATTATTCAAC
AAGGACATTTTGAAGCCATTTACTTTAAAAATGAGATTGCTCACCCCTATTATCTGACAGGTTTTGGAACGAGAGCCCAA
TTTGCCAAACTCTATAAAACGATTTATCAGTTTCCGGAGTTTGATATACGTTATAAACTAAAAAAATTGGCTGCTTATCT
CAACATTGATTCAATTCTACTCATAAAGATGATTCAAATTTTTGAAGAACTGGGTTTTGTAACGGTTCAAGATGGAGTGA
TGCGAGTTAACAAGGAAGCAGAAAAAAAAGCGATTGAGAGTAGCCATATTTATCAAGAACTCAAAAAAATAGTCAAGGAG
CAGGAACTGATGGCTCTAGGAACTGTTCAAGAAATTTATGATTATCTGATGGAAAAGGATGAATGTTCAAACTAG

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-733)

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-434)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZCC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

74.189

99.462

0.738
  recJ Bacillus subtilis subsp. subtilis str. 168

37.887

100

0.395

Multiple sequence alignment