Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KU509_RS13090 Genome accession   NZ_CP077917
Coordinates   2664827..2665453 (+) Length   208 a.a.
NCBI ID   WP_001108889.1    Uniprot ID   Q7B2U9
Organism   Staphylococcus aureus strain 280     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2659827..2670453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU509_RS13055 (KU509_13090) - 2660811..2661143 (-) 333 WP_000516793.1 DUF4889 domain-containing protein -
  KU509_RS13060 (KU509_13095) - 2661227..2662372 (-) 1146 WP_000487140.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  KU509_RS13070 (KU509_13105) gpsB 2663023..2663367 (-) 345 WP_001286320.1 cell division regulator GpsB -
  KU509_RS13075 (KU509_13110) - 2663381..2663944 (-) 564 WP_000241308.1 DUF1273 domain-containing protein -
  KU509_RS13080 (KU509_13115) - 2663937..2664287 (-) 351 WP_061838432.1 YppE family protein -
  KU509_RS13085 (KU509_13120) - 2664342..2664521 (-) 180 WP_001788819.1 hypothetical protein -
  KU509_RS13090 (KU509_13125) recU 2664827..2665453 (+) 627 WP_001108889.1 Holliday junction resolvase RecU Machinery gene
  KU509_RS13095 (KU509_13130) - 2665450..2667633 (+) 2184 WP_049307715.1 transglycosylase domain-containing protein -
  KU509_RS13100 (KU509_13135) - 2668200..2668541 (-) 342 WP_000182032.1 YpoC family protein -
  KU509_RS13105 (KU509_13140) nth 2668546..2669205 (-) 660 WP_000253775.1 endonuclease III -
  KU509_RS13110 (KU509_13145) - 2669195..2669881 (-) 687 WP_225806191.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24443.81 Da        Isoelectric Point: 9.7084

>NTDB_id=510891 KU509_RS13090 WP_001108889.1 2664827..2665453(+) (recU) [Staphylococcus aureus strain 280]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=510891 KU509_RS13090 WP_001108889.1 2664827..2665453(+) (recU) [Staphylococcus aureus strain 280]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATACATTTTATCTTAAAAGTGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAGCGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAGTATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7B2U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529