Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   ST4145_RS02205 Genome accession   NZ_CP065492
Coordinates   402313..402756 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4145     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 397313..407756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4145_RS02185 (ST4145_02170) - 397835..398587 (-) 753 WP_014727345.1 NUDIX hydrolase -
  ST4145_RS02190 (ST4145_02175) - 398651..399757 (-) 1107 WP_024009756.1 AAA family ATPase -
  ST4145_RS02195 (ST4145_02180) gdhA 400101..401453 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  ST4145_RS02200 (ST4145_02185) - 401712..402122 (+) 411 WP_011680804.1 peptide deformylase -
  ST4145_RS02205 (ST4145_02190) rcrR 402313..402756 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  ST4145_RS02210 (ST4145_02195) rcrP 402760..404574 (+) 1815 WP_014608025.1 ABC transporter ATP-binding protein Regulator
  ST4145_RS02215 (ST4145_02200) rcrQ 404564..406342 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  ST4145_RS02220 (ST4145_02205) - 406498..406869 (+) 372 WP_224103327.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=510887 ST4145_RS02205 WP_002945408.1 402313..402756(+) (rcrR) [Streptococcus thermophilus strain 4145]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=510887 ST4145_RS02205 WP_002945408.1 402313..402756(+) (rcrR) [Streptococcus thermophilus strain 4145]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537