Detailed information    

insolico Bioinformatically predicted

Overview


Name   stkP/pknB   Type   Regulator
Locus tag   STCNRZ887_RS06365 Genome accession   NZ_CP065491
Coordinates   1239802..1241673 (-) Length   623 a.a.
NCBI ID   WP_011226292.1    Uniprot ID   Q5M3J0
Organism   Streptococcus thermophilus strain CNRZ887     
Function   activate comX expression (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1238038..1308126 1239802..1241673 within 0


Gene organization within MGE regions


Location: 1238038..1308126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ887_RS06355 (STCNRZ887_06380) liaF 1238046..1238744 (-) 699 WP_011226289.1 cell wall-active antibiotics response protein LiaF -
  STCNRZ887_RS06360 - 1239010..1239165 (-) 156 WP_011226290.1 ion channel -
  STCNRZ887_RS06365 (STCNRZ887_06390) stkP/pknB 1239802..1241673 (-) 1872 WP_011226292.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  STCNRZ887_RS06370 (STCNRZ887_06395) - 1241673..1242410 (-) 738 WP_002946881.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  STCNRZ887_RS06375 (STCNRZ887_06400) rsmB 1242454..1243776 (-) 1323 WP_014608533.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  STCNRZ887_RS06380 (STCNRZ887_06405) fmt 1243766..1244701 (-) 936 WP_002951411.1 methionyl-tRNA formyltransferase -
  STCNRZ887_RS06385 (STCNRZ887_06410) - 1244719..1247115 (-) 2397 WP_011226295.1 primosomal protein N' -
  STCNRZ887_RS06390 (STCNRZ887_06415) rpoZ 1247257..1247571 (-) 315 WP_002951415.1 DNA-directed RNA polymerase subunit omega -
  STCNRZ887_RS06395 (STCNRZ887_06420) gmk 1247593..1248222 (-) 630 WP_011226296.1 guanylate kinase -
  STCNRZ887_RS06400 (STCNRZ887_06425) ftsY 1248455..1249846 (-) 1392 WP_011226297.1 signal recognition particle-docking protein FtsY -
  STCNRZ887_RS06405 (STCNRZ887_06430) - 1249860..1250675 (-) 816 WP_011227405.1 Cof-type HAD-IIB family hydrolase -
  STCNRZ887_RS06410 (STCNRZ887_06435) - 1250668..1251462 (-) 795 WP_059257398.1 HAD family hydrolase -
  STCNRZ887_RS06415 (STCNRZ887_06440) - 1251645..1252022 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  STCNRZ887_RS06420 (STCNRZ887_06445) - 1252027..1252725 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  STCNRZ887_RS06425 (STCNRZ887_06450) - 1252737..1253522 (+) 786 WP_002951425.1 hypothetical protein -
  STCNRZ887_RS06430 (STCNRZ887_06455) amiF 1253572..1254501 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  STCNRZ887_RS06435 (STCNRZ887_06460) amiE 1254494..1255579 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STCNRZ887_RS06440 (STCNRZ887_06465) amiD 1255589..1256515 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  STCNRZ887_RS06445 (STCNRZ887_06470) amiC 1256515..1258008 (-) 1494 WP_011227407.1 ABC transporter permease Regulator
  STCNRZ887_RS06450 (STCNRZ887_06475) amiA 1258070..1260037 (-) 1968 WP_011225333.1 peptide ABC transporter substrate-binding protein Regulator
  STCNRZ887_RS06455 (STCNRZ887_06480) - 1260393..1261642 (+) 1250 Protein_1216 ISL3 family transposase -
  STCNRZ887_RS06460 (STCNRZ887_06485) amiA3 1261687..1263660 (-) 1974 WP_011226306.1 peptide ABC transporter substrate-binding protein Regulator
  STCNRZ887_RS06465 (STCNRZ887_06490) - 1263864..1264054 (-) 191 Protein_1218 IS3 family transposase -
  STCNRZ887_RS06470 (STCNRZ887_06495) - 1264048..1264449 (-) 402 Protein_1219 ABC transporter ATP-binding protein -
  STCNRZ887_RS06475 (STCNRZ887_06500) - 1264444..1264804 (-) 361 Protein_1220 TatD family hydrolase -
  STCNRZ887_RS06480 (STCNRZ887_06505) - 1265154..1266359 (+) 1206 WP_011227415.1 OFA family MFS transporter -
  STCNRZ887_RS06485 (STCNRZ887_06510) - 1266405..1267756 (-) 1352 Protein_1222 IS3 family transposase -
  STCNRZ887_RS06490 (STCNRZ887_06515) pta 1267842..1268825 (-) 984 WP_011226315.1 phosphate acetyltransferase -
  STCNRZ887_RS06495 (STCNRZ887_06520) - 1268839..1269735 (-) 897 WP_011226316.1 RluA family pseudouridine synthase -
  STCNRZ887_RS06500 (STCNRZ887_06525) - 1269732..1270568 (-) 837 WP_041827075.1 NAD kinase -
  STCNRZ887_RS06505 (STCNRZ887_06530) - 1270540..1271214 (-) 675 WP_002951443.1 GTP pyrophosphokinase family protein -
  STCNRZ887_RS06510 (STCNRZ887_06535) - 1271310..1271885 (+) 576 WP_002951444.1 CYTH domain-containing protein -
  STCNRZ887_RS06515 (STCNRZ887_06540) - 1272250..1273221 (+) 972 WP_002951446.1 ribose-phosphate diphosphokinase -
  STCNRZ887_RS06520 (STCNRZ887_06545) - 1273225..1274337 (+) 1113 WP_002948029.1 cysteine desulfurase family protein -
  STCNRZ887_RS06525 (STCNRZ887_06550) - 1274339..1274686 (+) 348 WP_011226321.1 DUF1831 domain-containing protein -
  STCNRZ887_RS06530 (STCNRZ887_06555) - 1274831..1275490 (+) 660 WP_041828288.1 redox-sensing transcriptional repressor Rex -
  STCNRZ887_RS06535 (STCNRZ887_06560) - 1275483..1276178 (+) 696 WP_011226323.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  STCNRZ887_RS06540 (STCNRZ887_06565) radC 1276231..1276917 (-) 687 WP_011226324.1 DNA repair protein RadC -
  STCNRZ887_RS06545 (STCNRZ887_06570) - 1276966..1278750 (-) 1785 WP_011226325.1 rhamnan synthesis F family protein -
  STCNRZ887_RS06550 (STCNRZ887_06575) - 1278747..1279802 (-) 1056 WP_002948022.1 glycosyltransferase -
  STCNRZ887_RS06555 (STCNRZ887_06580) - 1279822..1281027 (-) 1206 WP_011226326.1 ABC transporter ATP-binding protein -
  STCNRZ887_RS06560 (STCNRZ887_06585) - 1281027..1281836 (-) 810 WP_002948020.1 ABC transporter permease -
  STCNRZ887_RS06565 (STCNRZ887_06590) - 1281820..1282776 (-) 957 WP_011226328.1 glycosyltransferase family 2 protein -
  STCNRZ887_RS06570 (STCNRZ887_06595) - 1282773..1283921 (-) 1149 WP_041828290.1 glycosyltransferase family 1 protein -
  STCNRZ887_RS06575 (STCNRZ887_06600) - 1284030..1285040 (-) 1011 WP_011226330.1 glycosyltransferase family A protein -
  STCNRZ887_RS06580 (STCNRZ887_06605) - 1285040..1286314 (-) 1275 WP_011226331.1 lipopolysaccharide biosynthesis protein -
  STCNRZ887_RS06585 (STCNRZ887_06610) - 1286307..1286639 (-) 333 WP_011226332.1 DUF2304 domain-containing protein -
  STCNRZ887_RS06590 (STCNRZ887_06615) - 1286645..1287340 (-) 696 WP_173940715.1 glycosyltransferase family 2 protein -
  STCNRZ887_RS06595 (STCNRZ887_06620) rfbD 1287417..1288268 (-) 852 WP_014621820.1 dTDP-4-dehydrorhamnose reductase -
  STCNRZ887_RS06600 (STCNRZ887_06625) - 1288345..1289679 (-) 1335 WP_041828293.1 DUF6056 family protein -
  STCNRZ887_RS06605 (STCNRZ887_06630) - 1289792..1290712 (-) 921 WP_116920321.1 glycosyltransferase family 2 protein -
  STCNRZ887_RS06610 (STCNRZ887_06635) - 1290772..1292187 (-) 1416 WP_096811580.1 DUF2142 domain-containing protein -
  STCNRZ887_RS06615 (STCNRZ887_06640) - 1292521..1292856 (-) 336 WP_002891474.1 metal-sulfur cluster assembly factor -
  STCNRZ887_RS06620 (STCNRZ887_06645) rpoD 1292910..1294019 (-) 1110 WP_347114306.1 RNA polymerase sigma factor RpoD -
  STCNRZ887_RS06625 (STCNRZ887_06650) dnaG 1294023..1295834 (-) 1812 WP_011226339.1 DNA primase -
  STCNRZ887_RS06630 (STCNRZ887_06655) rpsU 1296205..1296381 (-) 177 WP_011226340.1 30S ribosomal protein S21 -
  STCNRZ887_RS06635 (STCNRZ887_06660) - 1296576..1297370 (-) 795 WP_011226341.1 transporter substrate-binding domain-containing protein -
  STCNRZ887_RS06640 (STCNRZ887_06665) - 1297463..1298572 (-) 1110 WP_041828295.1 aminotransferase -
  STCNRZ887_RS06645 (STCNRZ887_06670) - 1298919..1299716 (-) 798 WP_011226343.1 transporter substrate-binding domain-containing protein -
  STCNRZ887_RS06650 (STCNRZ887_06675) - 1299713..1300543 (-) 831 WP_041828297.1 transporter substrate-binding domain-containing protein -
  STCNRZ887_RS06655 (STCNRZ887_06680) - 1300756..1301220 (-) 465 WP_011226345.1 8-oxo-dGTP diphosphatase -
  STCNRZ887_RS06660 (STCNRZ887_06685) uvrB 1301265..1303256 (-) 1992 WP_002953358.1 excinuclease ABC subunit UvrB -
  STCNRZ887_RS06665 (STCNRZ887_06690) - 1303943..1304879 (-) 937 Protein_1258 type II CAAX endopeptidase family protein -
  STCNRZ887_RS06670 (STCNRZ887_06695) - 1305078..1307288 (+) 2211 WP_011226350.1 ABC transporter substrate-binding protein/permease -
  STCNRZ887_RS06675 (STCNRZ887_06700) - 1307288..1308028 (+) 741 WP_002945131.1 amino acid ABC transporter ATP-binding protein -

Sequence


Protein


Download         Length: 623 a.a.        Molecular weight: 67919.80 Da        Isoelectric Point: 7.1310

>NTDB_id=510845 STCNRZ887_RS06365 WP_011226292.1 1239802..1241673(-) (stkP/pknB) [Streptococcus thermophilus strain CNRZ887]
MIQVGKLFAGRYRILKSIGRGGMADVYLANDLILDNESVAIKVLRTNYQTDQVAVARFQREARAMTELSHPNIVAIRDIG
EEDGQQFLVMEYVDGSDLKKFIQDHAPLSNQDVVRIMGEVLSAMTLAHQKGIIHRDLKPQNVLLTKDGRAKVTDFGIAVA
FAETSLTQTNSMLGSVHYLSPEQARGSKATIQSDIYAMGIMLFEMLTGHIPFDGDSAVTIALQHFQKPLPSILAENRNVP
QALENVVIRATAKKLENRYNSTLEMSRDLVTSLHPSHSRDSKVVFDDMTDAKTLPKVDSVSSVGPEKKISPKPSEPTPAP
SKQPREKASLSKKKKNLFSTLLKVLLGFVFIGIIIFAYLVFTNPDNVQVPNVVGQELSTAQTKLESAGFKVGDVKEVEND
SVNKGKVIKTDPTAGTMRKEGASIDVYVSSGSKGFTLKNYKGKNYKDAIEDLTSNYGVSEDQIDIQHVEDDNAKEGEILS
QSSEKNKSFNPKDSKAKIKFRVATPKTITMPDVTGLTVSTAVQTLNSKDISSSSIEYHDYNTGVKLDKSKVPSNTEVLYQ
YPQVGTAVDGTVILYVSVVTKSSSIQQSSTASTTQSPSSTSSSSESSTASSTETATEATHTEQ

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=510845 STCNRZ887_RS06365 WP_011226292.1 1239802..1241673(-) (stkP/pknB) [Streptococcus thermophilus strain CNRZ887]
ATGATCCAAGTTGGCAAATTGTTTGCTGGACGTTATCGAATCCTTAAATCTATCGGACGTGGTGGTATGGCGGATGTTTA
TCTGGCTAACGACCTGATTCTGGATAATGAAAGTGTAGCTATTAAGGTGCTACGTACCAATTATCAAACTGATCAGGTTG
CTGTGGCGCGTTTCCAGCGTGAAGCACGTGCCATGACTGAGCTTAGCCATCCGAATATCGTTGCGATTAGAGATATTGGT
GAAGAAGACGGTCAGCAGTTCTTGGTGATGGAGTATGTGGATGGTTCGGACTTGAAGAAATTCATTCAAGACCATGCACC
ATTGTCTAACCAAGATGTTGTGCGTATTATGGGGGAAGTCCTTTCCGCCATGACTCTTGCCCACCAAAAGGGTATTATTC
ACCGTGACCTTAAGCCACAGAACGTTCTATTAACTAAGGATGGTAGAGCTAAGGTTACAGACTTTGGTATCGCAGTAGCA
TTTGCTGAAACCAGCCTGACACAAACTAACTCAATGTTGGGGTCAGTCCATTATTTGTCACCAGAACAGGCACGTGGTTC
TAAAGCCACTATCCAAAGTGATATCTATGCTATGGGGATTATGCTCTTTGAAATGTTGACAGGGCATATCCCTTTTGATG
GCGATAGTGCAGTAACCATTGCACTTCAACATTTCCAAAAGCCCCTGCCATCGATTTTGGCTGAGAACCGTAACGTTCCT
CAAGCTTTAGAAAATGTTGTTATTAGAGCAACTGCTAAAAAGCTTGAAAATCGTTACAACAGCACTTTGGAAATGAGTCG
CGACCTAGTAACTAGTTTGCATCCTAGTCATAGTCGTGATTCTAAGGTAGTTTTTGATGACATGACGGATGCTAAGACCC
TGCCAAAGGTTGATTCAGTTTCATCAGTAGGTCCTGAGAAAAAGATTTCTCCTAAACCATCAGAGCCTACACCGGCTCCA
AGCAAACAACCGAGGGAAAAAGCTTCTCTATCTAAAAAAAAGAAAAATCTCTTTTCAACTCTACTCAAGGTTTTACTAGG
CTTCGTCTTTATAGGAATTATCATTTTTGCCTATCTTGTTTTTACCAATCCTGACAATGTCCAAGTACCAAATGTTGTAG
GTCAAGAGTTGTCAACAGCTCAGACGAAACTTGAAAGTGCAGGCTTTAAGGTTGGCGATGTTAAAGAAGTCGAAAATGAT
TCAGTCAATAAGGGCAAAGTTATCAAGACCGACCCTACAGCTGGGACAATGCGTAAAGAGGGAGCAAGCATTGATGTCTA
TGTTTCTTCTGGTAGCAAAGGTTTCACTCTGAAAAATTACAAGGGGAAAAATTATAAGGATGCCATTGAGGATTTAACCT
CGAATTATGGGGTTTCCGAGGATCAGATCGATATTCAACATGTCGAAGACGATAATGCTAAAGAAGGCGAAATTCTATCT
CAAAGTTCGGAGAAAAACAAGTCCTTCAATCCTAAAGATAGTAAGGCAAAAATCAAGTTTCGTGTGGCAACTCCTAAGAC
TATAACTATGCCTGATGTGACTGGTTTAACTGTCTCGACAGCAGTCCAAACCTTGAATAGTAAAGACATTTCAAGTAGCA
GTATTGAGTATCATGACTATAATACTGGTGTTAAGTTGGATAAGAGTAAGGTACCTAGTAATACCGAGGTCCTTTATCAA
TATCCTCAAGTTGGTACTGCTGTTGATGGCACAGTGATTCTCTATGTTTCAGTCGTAACTAAGAGTTCAAGTATTCAACA
GTCAAGCACAGCAAGTACGACACAATCGCCGTCATCTACAAGTTCTAGTTCTGAAAGTAGTACAGCTTCTAGTACCGAAA
CAGCTACAGAAGCTACTCACACAGAGCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5M3J0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP/pknB Streptococcus salivarius strain HSISS4

90.361

93.258

0.843

  pknB Streptococcus mutans UA159

64.522

87.319

0.563

  stkP Streptococcus pneumoniae TIGR4

56.713

80.096

0.454

  stkP Streptococcus pneumoniae D39

56.513

80.096

0.453

  stkP Streptococcus pneumoniae R6

56.513

80.096

0.453

  stkP Streptococcus pneumoniae Rx1

56.313

80.096

0.451