Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   STCNRZ1575_RS08730 Genome accession   NZ_CP065490
Coordinates   1682470..1683831 (-) Length   453 a.a.
NCBI ID   WP_082302317.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1575     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1677470..1688831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1575_RS08700 (STCNRZ1575_08660) - 1678073..1679087 (-) 1015 Protein_1643 peptide ABC transporter ATP-binding protein -
  STCNRZ1575_RS08705 (STCNRZ1575_08665) rplA 1679215..1679904 (-) 690 WP_024704232.1 50S ribosomal protein L1 -
  STCNRZ1575_RS08710 (STCNRZ1575_08670) rplK 1680004..1680429 (-) 426 WP_002953535.1 50S ribosomal protein L11 -
  STCNRZ1575_RS08715 (STCNRZ1575_08675) - 1680601..1680954 (+) 354 WP_260214177.1 DUF3397 domain-containing protein -
  STCNRZ1575_RS08720 (STCNRZ1575_08680) - 1681046..1681543 (-) 498 WP_002947059.1 carbonic anhydrase -
  STCNRZ1575_RS08725 (STCNRZ1575_08685) - 1681686..1682381 (-) 696 Protein_1648 TIGR00266 family protein -
  STCNRZ1575_RS08730 (STCNRZ1575_08690) radA 1682470..1683831 (-) 1362 WP_082302317.1 DNA repair protein RadA Machinery gene
  STCNRZ1575_RS08735 (STCNRZ1575_08695) - 1684009..1684455 (-) 447 WP_002947069.1 dUTP diphosphatase -
  STCNRZ1575_RS08740 (STCNRZ1575_08700) - 1684669..1685271 (+) 603 Protein_1651 NADPH-dependent FMN reductase -
  STCNRZ1575_RS08745 - 1685290..1686541 (+) 1252 Protein_1652 NAD(P)H-dependent oxidoreductase -
  STCNRZ1575_RS08750 (STCNRZ1575_08715) - 1686659..1687450 (+) 792 Protein_1653 formate/nitrite transporter family protein -
  STCNRZ1575_RS08755 (STCNRZ1575_08720) - 1687459..1688022 (+) 564 WP_260214178.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49450.86 Da        Isoelectric Point: 6.6528

>NTDB_id=510801 STCNRZ1575_RS08730 WP_082302317.1 1682470..1683831(-) (radA) [Streptococcus thermophilus strain CNRZ1575]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEMQEVKNARVSLTGEKSKPTKLKEVSSISYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
GIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELIQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFVGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYVPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=510801 STCNRZ1575_RS08730 WP_082302317.1 1682470..1683831(-) (radA) [Streptococcus thermophilus strain CNRZ1575]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTAGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAATTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAGGTTGAGATGCAGGAGGTTAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAGTTAAAAGAAGTCTCTTCAATTAGTTATGCCCGCATAAAAACCGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGGAGTTTGGTTCTTATTGGAGGAGATCCAGGAATAGGGAAATCGACCCTCCTCTTACA
GGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCGGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAAGCAGTCCGTAGTCAAGTGGAG
GGTATCAAACCCGATTTCCTCATTATTGATTCTATTCAGACCATCATGAGCCCAGAGATCTCTGGCGTTCAAGGTTCTGT
TTCCCAGGTTCGTGAAGTAACTGCCGAACTCATACAGATTGCCAAAACCAATAACATTGCCACTTTCATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAGCACATGGTGGATACTGTGCTTTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTCTGAGGGCAGTTAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAAATGCAGTC
AGGTGGTCTGGTCGAGGTACTAAACCCTAGCCAAGTTTTCTTAGAAGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTCACAATGGAGGGGAGTCGACCTATCCTAGCTGAGGTTCAAGCTTTGGTGACACCGACCGTCTTTGGTAACGCAAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTTATCATGGCTGTCTTAGAGAAACGTTGCGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAGTTGGACGAGCCAGCTATTGACCTTGCAGTTGCCGTTGCTA
TCGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTCGTAGGAGAAATTGGCTTGACCGGAGAGATTCGT
CGTGTGACTCGTATTGAGCAGCGTATCAATGAAGCCGCTAAACTAGGTTTTACTAAGATTTATGTTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGGTCATTGGGGTCACAACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611