Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   STAVA1121_RS08730 Genome accession   NZ_CP065488
Coordinates   1664536..1665897 (-) Length   453 a.a.
NCBI ID   WP_082302317.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA1121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1659536..1670897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS08705 (STAVA1121_08590) rplA 1661280..1661969 (-) 690 WP_347131245.1 50S ribosomal protein L1 -
  STAVA1121_RS08710 (STAVA1121_08595) rplK 1662069..1662494 (-) 426 WP_002953535.1 50S ribosomal protein L11 -
  STAVA1121_RS08715 (STAVA1121_08600) - 1662666..1663019 (+) 354 WP_002953536.1 DUF3397 domain-containing protein -
  STAVA1121_RS08720 (STAVA1121_08605) - 1663111..1663608 (-) 498 WP_002947059.1 carbonic anhydrase -
  STAVA1121_RS08725 (STAVA1121_08610) - 1663751..1664447 (-) 697 Protein_1661 TIGR00266 family protein -
  STAVA1121_RS08730 (STAVA1121_08615) radA 1664536..1665897 (-) 1362 WP_082302317.1 DNA repair protein RadA Machinery gene
  STAVA1121_RS08735 (STAVA1121_08620) - 1666075..1666521 (-) 447 WP_002947069.1 dUTP diphosphatase -
  STAVA1121_RS08740 (STAVA1121_08625) - 1666735..1667337 (+) 603 Protein_1664 NADPH-dependent FMN reductase -
  STAVA1121_RS08745 (STAVA1121_08630) - 1667356..1668606 (+) 1251 Protein_1665 NAD(P)H-dependent oxidoreductase -
  STAVA1121_RS08750 (STAVA1121_08635) - 1668724..1669516 (+) 793 Protein_1666 formate/nitrite transporter family protein -
  STAVA1121_RS08755 (STAVA1121_08640) - 1669525..1670097 (+) 573 Protein_1667 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49450.86 Da        Isoelectric Point: 6.6528

>NTDB_id=510684 STAVA1121_RS08730 WP_082302317.1 1664536..1665897(-) (radA) [Streptococcus thermophilus strain AVA1121]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEMQEVKNARVSLTGEKSKPTKLKEVSSISYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
GIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELIQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFVGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYVPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=510684 STAVA1121_RS08730 WP_082302317.1 1664536..1665897(-) (radA) [Streptococcus thermophilus strain AVA1121]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTAGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAATTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAGGTTGAGATGCAGGAGGTAAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAGTTAAAAGAAGTCTCTTCAATTAGTTATGCCCGCATAAAAACCGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGGAGTTTGGTTCTTATTGGAGGAGATCCAGGAATAGGGAAATCGACCCTCCTCTTACA
GGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCGGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAAGCAGTCCGTAGTCAAGTGGAG
GGTATCAAACCCGATTTCCTCATTATTGATTCTATTCAGACCATCATGAGCCCAGAGATCTCTGGCGTTCAAGGTTCTGT
TTCCCAGGTTCGTGAAGTAACTGCCGAACTCATACAGATTGCCAAAACCAATAACATTGCCACTTTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAGCACATGGTGGATACTGTGCTTTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTCTGAGGGCAGTTAAAAACCGTTTTGGTTCAACCAATGAGATTGGTATTTTTGAAATGCAGTC
AGGTGGTCTGGTCGAGGTACTAAACCCTAGCCAAGTTTTCTTAGAAGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTCACAATGGAGGGGAGTCGACCTATCCTAGCTGAGGTTCAAGCTTTGGTGACACCGACCGTCTTTGGTAACGCAAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGTCTTATCATGGCTGTCTTAGAGAAACGTTGCGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAGTTGGACGAGCCAGCTATTGACCTTGCAGTTGCCGTTGCTA
TCGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTCGTAGGAGAAATTGGCTTGACCGGAGAGATTCGT
CGTGTGACTCGTATTGAGCAGCGTATCAATGAAGCCGCTAAACTAGGTTTTACTAAGATTTATGTTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATCCAGGTCATTGGGGTCACAACGGTAGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611