Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SIR_RS09955 Genome accession   NC_022246
Coordinates   31457..32230 (+) Length   257 a.a.
NCBI ID   WP_009567705.1    Uniprot ID   T1ZC57
Organism   Streptococcus intermedius B196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26457..37230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS09935 (SIR_0039) mreD 27235..27735 (+) 501 WP_003075140.1 rod shape-determining protein MreD -
  SIR_RS09940 (SIR_0040) pcsB 27845..29026 (+) 1182 WP_003077627.1 peptidoglycan hydrolase PcsB -
  SIR_RS09945 (SIR_0041) - 29160..30128 (+) 969 WP_003075138.1 ribose-phosphate diphosphokinase -
  SIR_RS09950 (SIR_0042) - 30292..31479 (+) 1188 WP_009567704.1 pyridoxal phosphate-dependent aminotransferase -
  SIR_RS09955 (SIR_0043) recO 31457..32230 (+) 774 WP_009567705.1 DNA repair protein RecO Machinery gene
  SIR_RS09960 (SIR_0044) plsX 32227..33225 (+) 999 WP_009567706.1 phosphate acyltransferase PlsX -
  SIR_RS09965 (SIR_0045) - 33222..33467 (+) 246 WP_003075134.1 acyl carrier protein -
  SIR_RS09970 (SIR_0046) purC 33612..34319 (+) 708 WP_021002268.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30084.50 Da        Isoelectric Point: 5.1816

>NTDB_id=51067 SIR_RS09955 WP_009567705.1 31457..32230(+) (recO) [Streptococcus intermedius B196]
MLKSITSKGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHVRNSKLSPVIQPLVVANFLMKVNDDGLSYIDDYQEVTVFQ
HINHDLFTMAYATYVVALADASIQDNEIDSALFAFLQKMLELMEQGLDYEVLTNIFEIQILSRFGVSLNFHECCFCHRIG
LPFDFSFTYNGVLCPEHYSKDERRSHLEPNILYLLDQFQAVQFNDLKTISLNSELKYQLRKVIDQIYEEYVGIHLKSKKF
IDSLEDWGEILKNKESE

Nucleotide


Download         Length: 774 bp        

>NTDB_id=51067 SIR_RS09955 WP_009567705.1 31457..32230(+) (recO) [Streptococcus intermedius B196]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTTCTCTATAACCGTAATTTTCGTGAAGATGATAAGCTAGTTAAAATTTT
CACAGAACAAGCTGGCAAGAGGATGTTTTTCGTGAAACACGTTAGAAATTCTAAGTTAAGTCCAGTTATTCAACCTTTAG
TAGTCGCTAATTTTTTGATGAAGGTAAATGATGACGGTTTGAGCTATATTGATGATTATCAAGAGGTTACCGTTTTCCAG
CATATCAACCATGATCTTTTTACAATGGCTTATGCGACTTATGTGGTAGCTCTAGCGGATGCTAGTATTCAGGATAACGA
AATAGACTCTGCTCTCTTTGCTTTTTTGCAAAAAATGTTAGAATTGATGGAGCAAGGTTTGGATTACGAAGTGCTGACCA
ATATTTTTGAAATTCAAATTTTGTCGCGTTTTGGCGTTTCTTTGAATTTTCATGAGTGTTGTTTTTGCCACCGAATAGGG
CTACCGTTTGATTTTTCTTTTACCTATAATGGCGTTTTATGTCCAGAACATTATAGCAAAGATGAGCGACGGAGTCATTT
GGAACCCAATATTCTTTATTTATTAGACCAATTTCAAGCAGTTCAATTTAATGACCTGAAAACAATTTCGTTAAATTCTG
AATTAAAATATCAATTGCGAAAAGTAATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAATCCAAAAAATTT
ATTGATTCTCTGGAAGACTGGGGAGAAATCTTAAAGAACAAGGAGTCGGAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZC57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

73.333

99.222

0.728

Multiple sequence alignment