Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STAVA1121_RS02265 Genome accession   NZ_CP065488
Coordinates   412328..412771 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA1121     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 407328..417771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS02245 (STAVA1121_02220) - 407894..408646 (-) 753 WP_347131398.1 NUDIX domain-containing protein -
  STAVA1121_RS02250 (STAVA1121_02225) - 408710..409816 (-) 1107 Protein_382 AAA family ATPase -
  STAVA1121_RS02255 (STAVA1121_02230) gdhA 410160..411512 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STAVA1121_RS02260 (STAVA1121_02235) - 411768..412178 (+) 411 WP_087009714.1 peptide deformylase -
  STAVA1121_RS02265 (STAVA1121_02240) rcrR 412328..412771 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  STAVA1121_RS02270 (STAVA1121_02245) rcrP 412775..414589 (+) 1815 WP_087009715.1 ABC transporter ATP-binding protein Regulator
  STAVA1121_RS02275 (STAVA1121_02250) rcrQ 414579..416357 (+) 1779 WP_087009716.1 ABC transporter ATP-binding protein Regulator
  STAVA1121_RS02280 (STAVA1121_02255) - 416513..416884 (+) 372 WP_002945426.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=510652 STAVA1121_RS02265 WP_002945408.1 412328..412771(+) (rcrR) [Streptococcus thermophilus strain AVA1121]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=510652 STAVA1121_RS02265 WP_002945408.1 412328..412771(+) (rcrR) [Streptococcus thermophilus strain AVA1121]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAATAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537