Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   STT19_RS03645 Genome accession   NZ_CP065487
Coordinates   682999..683292 (+) Length   97 a.a.
NCBI ID   WP_347128817.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST19     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 677999..688292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT19_RS03625 (STT19_03620) - 679094..680236 (+) 1143 WP_300975703.1 AbiH family protein -
  STT19_RS03630 (STT19_03625) - 680402..681109 (+) 708 WP_011680985.1 hypothetical protein -
  STT19_RS03635 (STT19_03630) - 681308..682477 (+) 1170 WP_347128815.1 restriction endonuclease subunit S -
  STT19_RS03640 (STT19_03635) - 682691..683009 (+) 319 Protein_656 type II toxin-antitoxin system RelE/ParE family toxin -
  STT19_RS03645 (STT19_03640) HI0659 682999..683292 (+) 294 WP_347128817.1 helix-turn-helix transcriptional regulator Machinery gene
  STT19_RS03650 (STT19_03645) - 683314..684915 (+) 1602 WP_014621408.1 type I restriction-modification system subunit M -
  STT19_RS03655 (STT19_03650) - 685023..685409 (+) 387 Protein_659 PD-(D/E)XK nuclease family transposase -
  STT19_RS03660 (STT19_03655) - 685510..686511 (+) 1002 WP_347128819.1 DNA/RNA non-specific endonuclease -
  STT19_RS03665 (STT19_03660) - 686663..687223 (+) 561 WP_179970706.1 LemA family protein -
  STT19_RS03670 (STT19_03665) htpX 687225..688127 (+) 903 WP_023909551.1 zinc metalloprotease HtpX -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10760.50 Da        Isoelectric Point: 5.8962

>NTDB_id=510599 STT19_RS03645 WP_347128817.1 682999..683292(+) (HI0659) [Streptococcus thermophilus strain ST19]
MKNSAIGSNWKDVRSELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKI

Nucleotide


Download         Length: 294 bp        

>NTDB_id=510599 STT19_RS03645 WP_347128817.1 682999..683292(+) (HI0659) [Streptococcus thermophilus strain ST19]
ATGAAGAATAGTGCCATCGGTAGCAATTGGAAAGATGTGAGATCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TTTACGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGACACGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGACACGGTTTTGAAAGTCTTA
GCCAGTCTGGGCAAGACCCTCGCTGTCGTCCCACTGGAACAAGAAAAGATCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567