Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STT19_RS02245 Genome accession   NZ_CP065487
Coordinates   407725..408168 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST19     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 402725..413168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT19_RS02225 (STT19_02230) - 402743..403849 (-) 1107 WP_014608024.1 AAA family ATPase -
  STT19_RS02230 (STT19_02235) - 403958..405133 (+) 1176 WP_159340901.1 IS256-like element IS1191 family transposase -
  STT19_RS02235 (STT19_02240) gdhA 405514..406866 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STT19_RS02240 (STT19_02245) - 407124..407534 (+) 411 WP_011680804.1 peptide deformylase -
  STT19_RS02245 (STT19_02250) rcrR 407725..408168 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  STT19_RS02250 (STT19_02255) rcrP 408172..409986 (+) 1815 WP_014608025.1 ABC transporter ATP-binding protein Regulator
  STT19_RS02255 (STT19_02260) rcrQ 409976..411754 (+) 1779 WP_023909433.1 ABC transporter ATP-binding protein Regulator
  STT19_RS02260 (STT19_02265) - 411910..412281 (+) 372 WP_224103327.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=510589 STT19_RS02245 WP_002945408.1 407725..408168(+) (rcrR) [Streptococcus thermophilus strain ST19]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=510589 STT19_RS02245 WP_002945408.1 407725..408168(+) (rcrR) [Streptococcus thermophilus strain ST19]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537