Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Q7A_RS06180 Genome accession   NC_017857
Coordinates   1264891..1265955 (-) Length   354 a.a.
NCBI ID   WP_014706478.1    Uniprot ID   I1XI86
Organism   Methylophaga nitratireducenticrescens     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1259891..1270955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7A_RS06145 (Q7A_1261) arsC 1259976..1260326 (-) 351 WP_014706471.1 arsenate reductase (glutaredoxin) -
  Q7A_RS06150 (Q7A_1262) lapB 1260323..1261504 (-) 1182 WP_014706472.1 lipopolysaccharide assembly protein LapB -
  Q7A_RS06155 (Q7A_1263) - 1261513..1261809 (-) 297 WP_014706473.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  Q7A_RS06160 (Q7A_1264) fdxA 1261962..1262285 (+) 324 WP_014706474.1 ferredoxin FdxA -
  Q7A_RS06165 (Q7A_1265) rpoH 1262345..1263205 (-) 861 WP_014706475.1 RNA polymerase sigma factor RpoH -
  Q7A_RS06170 (Q7A_1266) ftsX 1263309..1264235 (-) 927 WP_014706476.1 permease-like cell division protein FtsX -
  Q7A_RS06175 (Q7A_1267) ftsE 1264232..1264894 (-) 663 WP_014706477.1 cell division ATP-binding protein FtsE -
  Q7A_RS06180 (Q7A_1268) pilA 1264891..1265955 (-) 1065 WP_014706478.1 signal recognition particle-docking protein FtsY Machinery gene
  Q7A_RS06185 (Q7A_1269) - 1266019..1267380 (+) 1362 WP_014706479.1 pitrilysin family protein -
  Q7A_RS06190 (Q7A_1270) - 1267370..1268671 (+) 1302 WP_014706480.1 pitrilysin family protein -
  Q7A_RS06195 (Q7A_1271) rsmD 1268738..1269226 (+) 489 WP_014706481.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  Q7A_RS06200 (Q7A_1272) coaD 1269236..1269733 (+) 498 WP_014706482.1 pantetheine-phosphate adenylyltransferase -
  Q7A_RS06205 (Q7A_1273) - 1269782..1270036 (+) 255 WP_014706483.1 YfhL family 4Fe-4S dicluster ferredoxin -
  Q7A_RS06210 (Q7A_1274) - 1270111..1270497 (+) 387 WP_014706484.1 H-NS family nucleoid-associated regulatory protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38291.78 Da        Isoelectric Point: 5.1226

>NTDB_id=51056 Q7A_RS06180 WP_014706478.1 1264891..1265955(-) (pilA) [Methylophaga nitratireducenticrescens]
MFSFLRKKAKPSENSSEEQLLTEQQSVAHDAEITADTQASDVSETPGFFGRLKQGLSRSSTKLTQGFADLVLGRKTIDDD
LLEELETQLLSADLGIEATQTIINDLTQRVARKQLNDPEALFAAMHADMVDILKPVSQPLQIPSSASPFVILMVGINGVG
KTTTIGKLAKQFQLQGKKVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQQNGADSASVIFDALQAAKARQMDILIADTAG
RLHTQSNLMEELKKVKRVMAKLDGNAPHEVMLVLDAGTGQNALSQAEQFHQAVGLTGITLTKLDGTAKGGIIFAIAKKIG
LPIRYIGVGEKIDDLRTFEAEDFVDALLGRETQQ

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=51056 Q7A_RS06180 WP_014706478.1 1264891..1265955(-) (pilA) [Methylophaga nitratireducenticrescens]
ATGTTTAGTTTCCTCAGAAAAAAAGCCAAACCCAGCGAAAACAGCAGCGAGGAGCAACTCCTCACTGAACAGCAGTCAGT
CGCACATGATGCGGAAATTACTGCAGATACTCAAGCCAGCGACGTTTCAGAGACCCCAGGATTTTTTGGACGCCTCAAAC
AGGGACTGAGTCGCAGCAGTACCAAATTGACGCAAGGCTTTGCCGATTTGGTCTTGGGGCGAAAAACCATTGATGATGAT
TTGCTTGAAGAACTGGAAACCCAACTGCTCAGTGCAGATTTAGGGATAGAAGCCACCCAAACCATTATTAACGATTTAAC
ACAACGTGTGGCCCGCAAGCAGCTTAATGACCCGGAAGCCCTGTTTGCAGCAATGCATGCCGATATGGTGGATATTCTCA
AACCAGTTTCCCAACCATTGCAGATTCCATCATCTGCCAGTCCTTTTGTGATCCTGATGGTGGGTATTAATGGTGTTGGA
AAAACGACAACCATTGGCAAACTGGCCAAACAGTTTCAGCTGCAAGGCAAAAAAGTGATGCTGGCGGCCGGTGATACATT
TCGTGCTGCAGCAGTTGAACAACTACAGGTCTGGGGCGAACGTAATCAGATCCCGGTGATTGCTCAACAAAATGGTGCTG
ATTCTGCTTCGGTTATCTTTGATGCTCTGCAAGCGGCCAAAGCACGACAGATGGATATTCTGATTGCTGATACGGCGGGT
CGTCTACATACTCAATCCAATCTGATGGAAGAGCTGAAAAAAGTAAAACGCGTTATGGCCAAACTGGATGGCAATGCGCC
GCATGAAGTCATGCTGGTGCTGGATGCCGGCACTGGACAGAATGCTTTGTCTCAGGCTGAACAATTTCATCAGGCGGTAG
GATTAACCGGTATTACGCTGACGAAACTTGATGGTACGGCTAAAGGCGGTATTATTTTTGCCATCGCGAAAAAAATCGGG
TTACCTATTCGTTACATCGGAGTGGGTGAAAAGATAGATGATTTAAGAACCTTTGAAGCAGAAGATTTTGTCGATGCTTT
ACTGGGCCGTGAAACACAACAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(63-126)

SRP54-type protein, GTPase domain (SRP54)

(148-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I1XI86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

57.947

85.311

0.494

Multiple sequence alignment