Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KU501_RS03900 Genome accession   NZ_CP077911
Coordinates   818460..819542 (+) Length   360 a.a.
NCBI ID   WP_000370984.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 318     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 813460..824542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU501_RS03880 (KU501_03840) gdpS 813838..814908 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  KU501_RS03885 (KU501_03845) - 815226..816281 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  KU501_RS03890 (KU501_03850) - 816445..817086 (-) 642 WP_000192947.1 YigZ family protein -
  KU501_RS03895 (KU501_03855) fakB1 817230..818096 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  KU501_RS03900 (KU501_03860) comFA 818460..819542 (+) 1083 WP_000370984.1 DEAD/DEAH box helicase Machinery gene
  KU501_RS03905 (KU501_03865) - 819535..820209 (+) 675 WP_225798500.1 ComF family protein -
  KU501_RS03910 (KU501_03870) hpf 820270..820842 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KU501_RS03915 (KU501_03875) secA 821256..823787 (+) 2532 WP_000506536.1 preprotein translocase subunit SecA -
  KU501_RS03920 (KU501_03880) - 823829..823927 (+) 99 WP_001791369.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42016.52 Da        Isoelectric Point: 9.6568

>NTDB_id=510552 KU501_RS03900 WP_000370984.1 818460..819542(+) (comFA) [Staphylococcus aureus strain 318]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPLENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSIYKQKITKLTYVHSEDVFRFEKVEQLRNGQYDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=510552 KU501_RS03900 WP_000370984.1 818460..819542(+) (comFA) [Staphylococcus aureus strain 318]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
ATCGGAACAACAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGACGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCTCGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAACAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGATTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATACGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGTGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369