Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   STR1_RS03590 Genome accession   NZ_CP065486
Coordinates   686021..686314 (+) Length   97 a.a.
NCBI ID   WP_014621407.1    Uniprot ID   A0AAU9H9S0
Organism   Streptococcus thermophilus strain R1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 681021..691314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STR1_RS03570 (STR1_03565) - 681184..682521 (+) 1338 WP_095559308.1 SIR2 family protein -
  STR1_RS03575 (STR1_03570) - 682514..684217 (+) 1704 WP_095559309.1 ATP-binding protein -
  STR1_RS03580 (STR1_03575) - 684262..685500 (+) 1239 WP_232505743.1 restriction endonuclease subunit S -
  STR1_RS03585 (STR1_03580) - 685713..686031 (+) 319 Protein_658 type II toxin-antitoxin system RelE/ParE family toxin -
  STR1_RS03590 (STR1_03585) HI0659 686021..686314 (+) 294 WP_014621407.1 helix-turn-helix transcriptional regulator Machinery gene
  STR1_RS03595 (STR1_03590) - 686336..687937 (+) 1602 WP_095559310.1 type I restriction-modification system subunit M -
  STR1_RS03600 (STR1_03595) - 688045..688899 (+) 855 Protein_661 Rpn family recombination-promoting nuclease/putative transposase -
  STR1_RS03605 (STR1_03600) - 688972..689871 (+) 900 WP_309252124.1 DNA/RNA non-specific endonuclease -
  STR1_RS03610 (STR1_03605) - 690021..690581 (+) 561 WP_064355522.1 LemA family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10744.50 Da        Isoelectric Point: 5.8962

>NTDB_id=510537 STR1_RS03590 WP_014621407.1 686021..686314(+) (HI0659) [Streptococcus thermophilus strain R1]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKI

Nucleotide


Download         Length: 294 bp        

>NTDB_id=510537 STR1_RS03590 WP_014621407.1 686021..686314(+) (HI0659) [Streptococcus thermophilus strain R1]
ATGAAGAATAGTGCCATCGGCAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TTTACGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGACACGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGACACGGTTTTGAAAGTCTTA
GCCAGTCTGGGCAAGACCCTCGCTGTCGTCCCACTGGAACAAGAAAAGATCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567