Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STR1_RS02180 Genome accession   NZ_CP065486
Coordinates   409782..410225 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain R1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 404782..415225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STR1_RS02160 (STR1_02160) - 405295..406056 (-) 762 WP_064355432.1 NUDIX domain-containing protein -
  STR1_RS02165 (STR1_02165) - 406120..407226 (-) 1107 WP_014608024.1 AAA family ATPase -
  STR1_RS02170 (STR1_02170) gdhA 407570..408922 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STR1_RS02175 (STR1_02175) - 409181..409591 (+) 411 WP_011680804.1 peptide deformylase -
  STR1_RS02180 (STR1_02180) rcrR 409782..410225 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  STR1_RS02185 (STR1_02185) rcrP 410229..412043 (+) 1815 WP_095559251.1 ABC transporter ATP-binding protein Regulator
  STR1_RS02190 (STR1_02190) rcrQ 412033..413811 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  STR1_RS02195 (STR1_02195) - 413967..414224 (+) 258 WP_224107491.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=510527 STR1_RS02180 WP_002945408.1 409782..410225(+) (rcrR) [Streptococcus thermophilus strain R1]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=510527 STR1_RS02180 WP_002945408.1 409782..410225(+) (rcrR) [Streptococcus thermophilus strain R1]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537