Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   KU527_RS09585 Genome accession   NZ_CP077908
Coordinates   1930468..1930845 (+) Length   125 a.a.
NCBI ID   WP_001621795.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 322     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1925468..1935845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU527_RS09565 (KU527_09550) - 1927935..1928183 (+) 249 WP_229345124.1 site-specific DNA-methyltransferase -
  KU527_RS09570 (KU527_09555) - 1928175..1928613 (-) 439 Protein_1857 IS30 family transposase -
  KU527_RS09575 (KU527_09560) - 1928688..1929817 (+) 1130 WP_098686295.1 IS3 family transposase -
  KU527_RS09580 (KU527_09565) - 1929831..1930348 (-) 518 Protein_1859 IS30 family transposase -
  KU527_RS09585 (KU527_09570) lrpC 1930468..1930845 (+) 378 WP_001621795.1 Lrp/AsnC family transcriptional regulator Machinery gene
  KU527_RS09590 (KU527_09575) - 1930907..1931380 (+) 474 WP_000455984.1 GNAT family N-acetyltransferase -
  KU527_RS09595 (KU527_09580) - 1931622..1932179 (-) 558 WP_000633423.1 DUF4811 domain-containing protein -
  KU527_RS09600 (KU527_09585) - 1932181..1933698 (-) 1518 WP_000107171.1 MDR family MFS transporter -
  KU527_RS09605 (KU527_09590) - 1933846..1934418 (+) 573 WP_000540837.1 TetR/AcrR family transcriptional regulator -
  KU527_RS09610 (KU527_09595) - 1934479..1935465 (-) 987 WP_000662031.1 tRNA dihydrouridine synthase -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14603.72 Da        Isoelectric Point: 4.7711

>NTDB_id=510520 KU527_RS09585 WP_001621795.1 1930468..1930845(+) (lrpC) [Staphylococcus aureus strain 322]
MLNNSRITINELSKQVNLSAPAVRERVNKLEDQGIIKGYTINIDYKELGYDVEILIELTIKNNRYKDFKEFISKQDNVEF
CYRVSGEACFVFKVRLENMDEVETFVDTIQPYGQIKCQFIFSSVV

Nucleotide


Download         Length: 378 bp        

>NTDB_id=510520 KU527_RS09585 WP_001621795.1 1930468..1930845(+) (lrpC) [Staphylococcus aureus strain 322]
TTGTTAAATAATAGTAGAATTACTATTAATGAATTAAGTAAACAAGTGAACTTATCTGCTCCAGCTGTAAGAGAAAGGGT
AAATAAACTTGAAGATCAAGGTATTATAAAAGGTTATACAATTAACATAGATTATAAGGAATTAGGTTACGATGTAGAAA
TATTAATTGAGTTAACTATAAAGAATAATAGATACAAAGATTTTAAAGAATTTATTTCAAAACAAGATAATGTTGAGTTT
TGTTATCGTGTATCAGGAGAGGCATGTTTTGTATTTAAGGTTCGGTTGGAAAATATGGATGAAGTAGAAACATTTGTTGA
TACCATACAGCCATATGGGCAGATAAAATGTCAGTTTATCTTTTCATCAGTTGTCTAA

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(56-121)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

42.975

96.8

0.416