Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STMM20_RS07835 Genome accession   NZ_CP065485
Coordinates   1546590..1547033 (-) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM20     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1541590..1552033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM20_RS07820 (STMM20_07790) - 1542477..1542848 (-) 372 WP_224103209.1 GNAT family acetyltransferase -
  STMM20_RS07825 (STMM20_07795) rcrQ 1543004..1544782 (-) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  STMM20_RS07830 (STMM20_07800) rcrP 1544772..1546586 (-) 1815 WP_024704204.1 ABC transporter ATP-binding protein Regulator
  STMM20_RS07835 (STMM20_07805) rcrR 1546590..1547033 (-) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  STMM20_RS07840 (STMM20_07810) - 1547224..1547634 (-) 411 WP_011680804.1 peptide deformylase -
  STMM20_RS07845 (STMM20_07815) gdhA 1547893..1549245 (-) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STMM20_RS07850 (STMM20_07820) - 1549589..1550701 (+) 1113 Protein_1515 AAA family ATPase -
  STMM20_RS07855 (STMM20_07825) - 1550765..1551517 (+) 753 WP_232973567.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=510496 STMM20_RS07835 WP_002945408.1 1546590..1547033(-) (rcrR) [Streptococcus thermophilus strain MM20]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=510496 STMM20_RS07835 WP_002945408.1 1546590..1547033(-) (rcrR) [Streptococcus thermophilus strain MM20]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537