Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STMM1_RS02280 Genome accession   NZ_CP065484
Coordinates   416908..417351 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 411908..422351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM1_RS02260 (STMM1_02260) - 412432..413184 (-) 753 WP_014727345.1 NUDIX hydrolase -
  STMM1_RS02265 (STMM1_02265) - 413248..414353 (-) 1106 Protein_385 AAA family ATPase -
  STMM1_RS02270 (STMM1_02270) gdhA 414697..416049 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STMM1_RS02275 (STMM1_02275) - 416307..416717 (+) 411 WP_011680804.1 peptide deformylase -
  STMM1_RS02280 (STMM1_02280) rcrR 416908..417351 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  STMM1_RS02285 (STMM1_02285) rcrP 417355..419169 (+) 1815 WP_014727346.1 ABC transporter ATP-binding protein Regulator
  STMM1_RS02290 (STMM1_02290) rcrQ 419159..420937 (+) 1779 WP_023909433.1 ABC transporter ATP-binding protein Regulator
  STMM1_RS02295 (STMM1_02295) - 421093..421350 (+) 258 WP_224107491.1 hypothetical protein -
  STMM1_RS02300 - 421576..421842 (+) 267 WP_207563339.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=510411 STMM1_RS02280 WP_002945408.1 416908..417351(+) (rcrR) [Streptococcus thermophilus strain MM1]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=510411 STMM1_RS02280 WP_002945408.1 416908..417351(+) (rcrR) [Streptococcus thermophilus strain MM1]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537