Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STCNRZ1151_RS02280 Genome accession   NZ_CP065483
Coordinates   414131..414574 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1151     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 409131..419574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1151_RS02260 (STCNRZ1151_02230) - 409652..410404 (-) 753 WP_011226910.1 NUDIX hydrolase -
  STCNRZ1151_RS02265 (STCNRZ1151_02235) - 410468..411574 (-) 1107 WP_011226911.1 AAA family ATPase -
  STCNRZ1151_RS02270 (STCNRZ1151_02240) gdhA 411918..413270 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STCNRZ1151_RS02275 (STCNRZ1151_02245) - 413529..413939 (+) 411 WP_011225559.1 peptide deformylase -
  STCNRZ1151_RS02280 (STCNRZ1151_02250) rcrR 414131..414574 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  STCNRZ1151_RS02285 (STCNRZ1151_02255) rcrP 414578..416392 (+) 1815 WP_011225560.1 ABC transporter ATP-binding protein Regulator
  STCNRZ1151_RS02290 (STCNRZ1151_02260) rcrQ 416382..418160 (+) 1779 WP_011226912.1 ABC transporter ATP-binding protein Regulator
  STCNRZ1151_RS02295 (STCNRZ1151_02265) - 418316..418564 (+) 249 WP_011225562.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=510358 STCNRZ1151_RS02280 WP_002945408.1 414131..414574(+) (rcrR) [Streptococcus thermophilus strain CNRZ1151]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=510358 STCNRZ1151_RS02280 WP_002945408.1 414131..414574(+) (rcrR) [Streptococcus thermophilus strain CNRZ1151]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537