Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   STCNRZ760_RS06980 Genome accession   NZ_CP065482
Coordinates   1336642..1336878 (-) Length   78 a.a.
NCBI ID   WP_308123564.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ760     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1331642..1341878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ760_RS06960 (STCNRZ760_06905) - 1332813..1334062 (+) 1250 Protein_1317 ISL3 family transposase -
  STCNRZ760_RS06965 (STCNRZ760_06910) amiA 1334107..1336074 (-) 1968 WP_347129349.1 peptide ABC transporter substrate-binding protein Regulator
  STCNRZ760_RS06970 (STCNRZ760_06915) - 1336278..1336468 (-) 191 Protein_1319 IS3 family transposase -
  STCNRZ760_RS06975 (STCNRZ760_06920) amiF 1336459..1336629 (-) 171 WP_014608546.1 hypothetical protein Regulator
  STCNRZ760_RS06980 (STCNRZ760_06925) amiF 1336642..1336878 (-) 237 WP_308123564.1 ABC transporter ATP-binding protein Regulator
  STCNRZ760_RS06985 (STCNRZ760_06930) - 1336858..1337218 (-) 361 Protein_1322 TatD family hydrolase -
  STCNRZ760_RS06990 (STCNRZ760_06935) - 1337567..1338772 (+) 1206 WP_011227415.1 OFA family MFS transporter -
  STCNRZ760_RS06995 (STCNRZ760_06940) - 1338843..1340170 (-) 1328 Protein_1324 IS3 family transposase -
  STCNRZ760_RS07000 (STCNRZ760_06945) pta 1340256..1341239 (-) 984 WP_011227420.1 phosphate acetyltransferase -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 8685.28 Da        Isoelectric Point: 10.0875

>NTDB_id=510322 STCNRZ760_RS06980 WP_308123564.1 1336642..1336878(-) (amiF) [Streptococcus thermophilus strain CNRZ760]
MIHSLSGGQRQRIGIARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVI

Nucleotide


Download         Length: 237 bp        

>NTDB_id=510322 STCNRZ760_RS06980 WP_308123564.1 1336642..1336878(-) (amiF) [Streptococcus thermophilus strain CNRZ760]
ATTATTCACTCACTTTCTGGGGGACAACGTCAACGTATCGGGATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTAT
CGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGCCCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGT
TGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGGTTCGTTTCATTTCTGACCGTATCGCTGTTATCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(3-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

97.368

97.436

0.949
  amiF Streptococcus thermophilus LMD-9

97.368

97.436

0.949
  amiF Streptococcus thermophilus LMG 18311

97.368

97.436

0.949
  amiE Streptococcus thermophilus LMG 18311

52.055

93.59

0.487
  amiE Streptococcus thermophilus LMD-9

52.055

93.59

0.487
  amiE Streptococcus salivarius strain HSISS4

52.055

93.59

0.487
  oppD Streptococcus mutans UA159

48.684

97.436

0.474