Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   ST90729_RS02230 Genome accession   NZ_CP065480
Coordinates   407200..407643 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90729     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 402200..412643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90729_RS02210 (ST90729_02215) - 402721..403475 (-) 755 Protein_374 NUDIX hydrolase -
  ST90729_RS02215 (ST90729_02220) - 403539..404645 (-) 1107 Protein_375 AAA family ATPase -
  ST90729_RS02220 (ST90729_02225) gdhA 404989..406341 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  ST90729_RS02225 (ST90729_02230) - 406599..407009 (+) 411 WP_011680804.1 peptide deformylase -
  ST90729_RS02230 (ST90729_02235) rcrR 407200..407643 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  ST90729_RS02235 (ST90729_02240) rcrP 407647..409461 (+) 1815 WP_347116699.1 ABC transporter ATP-binding protein Regulator
  ST90729_RS02240 (ST90729_02245) rcrQ 409451..411229 (+) 1779 WP_232975654.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=510176 ST90729_RS02230 WP_002945408.1 407200..407643(+) (rcrR) [Streptococcus thermophilus strain 90729]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=510176 ST90729_RS02230 WP_002945408.1 407200..407643(+) (rcrR) [Streptococcus thermophilus strain 90729]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537