Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KU540_RS12815 Genome accession   NZ_CP077894
Coordinates   2556534..2557505 (-) Length   323 a.a.
NCBI ID   WP_000876313.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 329     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2551534..2562505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU540_RS12790 (KU540_12720) murB 2552118..2553041 (+) 924 WP_000608439.1 UDP-N-acetylmuramate dehydrogenase -
  KU540_RS12795 (KU540_12725) - 2553059..2553373 (+) 315 WP_001127270.1 CHY zinc finger protein -
  KU540_RS12800 (KU540_12730) - 2553690..2554718 (-) 1029 WP_000754453.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  KU540_RS12805 (KU540_12735) - 2554833..2555594 (-) 762 WP_000616860.1 ABC transporter ATP-binding protein -
  KU540_RS12810 (KU540_12740) - 2555591..2556547 (-) 957 WP_001245580.1 iron chelate uptake ABC transporter family permease subunit -
  KU540_RS12815 (KU540_12745) ceuB 2556534..2557505 (-) 972 WP_000876313.1 ABC transporter permease Machinery gene
  KU540_RS12820 (KU540_12750) nrdF 2557880..2558851 (-) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  KU540_RS12825 (KU540_12755) nrdE 2558969..2561074 (-) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  KU540_RS12830 (KU540_12760) nrdI 2561037..2561435 (-) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35544.01 Da        Isoelectric Point: 10.1963

>NTDB_id=510164 KU540_RS12815 WP_000876313.1 2556534..2557505(-) (ceuB) [Staphylococcus aureus strain 329]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSISGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINVALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRVIVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=510164 KU540_RS12815 WP_000876313.1 2556534..2557505(-) (ceuB) [Staphylococcus aureus strain 329]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGCTAACAATCATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTATCAGACTCACAGCAAAATATATTGTTCTCAAGTCGAATACCAAGAACAA
TGAGTATTTTAATTGCTGGAAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGTATCTTAATTGCCTTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGCATCAGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTGA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTCGCTAGTTTTACAACGTTTATTTCATTACGT
ACGAACGCCGTACAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCGAATCATTTCACAATTGTAGGAATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTATGAAAAATTAATAAATGTTGCTCTATTTATTACTGCCACAATTACGGCATTAGTCGTCGTG
ACAGTTGGAACTTTACCATTCTTAGGTTTAGTTATTCCAAATATTATTTCGATTTATAGAGGCGATCATTTGAAAAATGC
AATTCCTCATACAATGATGTTAGGTGCAATATTTGTACTGTTTTCAGATATTGTAGGTAGAGTCATCGTTTATCCTTATG
AAATAAACATTGGCTTAACGATCGGTGTGTTTGGAACAATCATTTTCCTTATCTTACTAATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.071

0.471