Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KU540_RS12730 Genome accession   NZ_CP077894
Coordinates   2539834..2540916 (-) Length   360 a.a.
NCBI ID   WP_225806011.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 329     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2534834..2545916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU540_RS12710 (KU540_12640) - 2535453..2535546 (-) 94 Protein_2469 hypothetical protein -
  KU540_RS12715 (KU540_12645) secA 2535588..2538119 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  KU540_RS12720 (KU540_12650) hpf 2538534..2539106 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KU540_RS12725 (KU540_12655) - 2539167..2539841 (-) 675 WP_225806012.1 ComF family protein -
  KU540_RS12730 (KU540_12660) comFA 2539834..2540916 (-) 1083 WP_225806011.1 DEAD/DEAH box helicase Machinery gene
  KU540_RS12735 (KU540_12665) fakB1 2541280..2542146 (-) 867 WP_000686346.1 fatty acid kinase binding subunit FakB1 -
  KU540_RS12740 (KU540_12670) - 2542290..2542931 (+) 642 WP_000192950.1 YigZ family protein -
  KU540_RS12745 (KU540_12675) - 2543103..2544158 (-) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  KU540_RS12750 (KU540_12680) gdpS 2544476..2545546 (+) 1071 WP_000460988.1 GGDEF domain-containing protein GdpS -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41953.38 Da        Isoelectric Point: 9.5935

>NTDB_id=510163 KU540_RS12730 WP_225806011.1 2539834..2540916(-) (comFA) [Staphylococcus aureus strain 329]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSTK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQISNQRYTLVFFNNIEAM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQNMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=510163 KU540_RS12730 WP_225806011.1 2539834..2540916(-) (comFA) [Staphylococcus aureus strain 329]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAACAGTCTTATGCCTCAGAACACATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACAGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTACTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGCTATATCGAATTTTACAAGATCAAATTAGTAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAGCAATG
ATTAAAACGTTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCCACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
TATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369