Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KU540_RS09125 Genome accession   NZ_CP077894
Coordinates   1797543..1798169 (-) Length   208 a.a.
NCBI ID   WP_001108885.1    Uniprot ID   Q2YY57
Organism   Staphylococcus aureus strain 329     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1792543..1803169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU540_RS09105 (KU540_09050) - 1793164..1793850 (+) 687 WP_000362223.1 DnaD domain-containing protein -
  KU540_RS09110 (KU540_09055) nth 1793840..1794499 (+) 660 WP_000253771.1 endonuclease III -
  KU540_RS09115 (KU540_09060) - 1794504..1794845 (+) 342 WP_000182030.1 YpoC family protein -
  KU540_RS09120 (KU540_09065) - 1795363..1797546 (-) 2184 WP_000138360.1 transglycosylase domain-containing protein -
  KU540_RS09125 (KU540_09070) recU 1797543..1798169 (-) 627 WP_001108885.1 Holliday junction resolvase RecU Machinery gene
  KU540_RS09130 (KU540_09075) - 1798708..1799058 (+) 351 WP_001000808.1 YppE family protein -
  KU540_RS09135 (KU540_09080) - 1799051..1799614 (+) 564 WP_000241312.1 DUF1273 domain-containing protein -
  KU540_RS09140 (KU540_09085) gpsB 1799628..1799972 (+) 345 WP_001286320.1 cell division regulator GpsB -
  KU540_RS09150 (KU540_09095) - 1800623..1801768 (+) 1146 WP_000487163.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  KU540_RS09155 (KU540_09100) - 1801852..1802184 (+) 333 WP_000516806.1 DUF4889 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24427.81 Da        Isoelectric Point: 9.7084

>NTDB_id=510132 KU540_RS09125 WP_001108885.1 1797543..1798169(-) (recU) [Staphylococcus aureus strain 329]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=510132 KU540_RS09125 WP_001108885.1 1797543..1798169(-) (recU) [Staphylococcus aureus strain 329]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAACGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAATGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YY57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529