Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ST4134_RS07605 Genome accession   NZ_CP065478
Coordinates   1469436..1470470 (-) Length   344 a.a.
NCBI ID   WP_024703983.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4134     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1464436..1475470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4134_RS07580 (ST4134_07570) ilvD 1464688..1466406 (-) 1719 WP_011226435.1 dihydroxy-acid dehydratase -
  ST4134_RS07585 (ST4134_07575) - 1466519..1467700 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  ST4134_RS07595 (ST4134_07585) trmB 1467936..1468577 (-) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ST4134_RS07600 (ST4134_07590) ccrZ 1468587..1469378 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  ST4134_RS07605 (ST4134_07595) pptB 1469436..1470470 (-) 1035 WP_024703983.1 ABC transporter permease Regulator
  ST4134_RS07610 (ST4134_07600) pptA 1470470..1471201 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  ST4134_RS07615 (ST4134_07605) - 1471266..1471685 (+) 420 WP_011681530.1 HIT family protein -
  ST4134_RS07620 (ST4134_07610) - 1471682..1471990 (+) 309 WP_014608635.1 hypothetical protein -
  ST4134_RS07625 (ST4134_07615) - 1472032..1472763 (-) 732 WP_014608636.1 hypothetical protein -
  ST4134_RS07630 (ST4134_07620) - 1472782..1473417 (-) 636 WP_014727665.1 DUF4230 domain-containing protein -
  ST4134_RS07635 - 1473436..1473561 (-) 126 WP_011681534.1 hypothetical protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40019.52 Da        Isoelectric Point: 10.5812

>NTDB_id=510081 ST4134_RS07605 WP_024703983.1 1469436..1470470(-) (pptB) [Streptococcus thermophilus strain 4134]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGRAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLIAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKYTWYNLYLRAFLRSGDYVALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKFS
LILIGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=510081 ST4134_RS07605 WP_024703983.1 1469436..1470470(-) (pptB) [Streptococcus thermophilus strain 4134]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTTTTACTTCCTTTTTGGGGTAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGCGTGCTTTTAGATT
TTGGGTACTCATCCAGACCTTGATTTTTATCTTGGTCGTTCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAGTTG
TCCTTATAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGA
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAATATA
CGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACGTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGATTGGAGTTATGCTAGTTTTGAGTCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

100

100

1

  pptB Streptococcus salivarius strain HSISS4

92.733

100

0.927