Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   KU542_RS11220 Genome accession   NZ_CP077893
Coordinates   2219844..2220689 (-) Length   281 a.a.
NCBI ID   WP_225806540.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 332     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2214844..2225689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU542_RS11185 (KU542_11185) rpsR 2215829..2216071 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  KU542_RS11190 (KU542_11190) ssbA 2216123..2216626 (-) 504 WP_182055356.1 single-stranded DNA-binding protein Machinery gene
  KU542_RS11195 (KU542_11195) rpsF 2216647..2216943 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  KU542_RS11200 (KU542_11200) - 2217187..2217378 (+) 192 WP_001052483.1 hypothetical protein -
  KU542_RS11205 (KU542_11205) ychF 2217464..2218561 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  KU542_RS11210 (KU542_11210) - 2218573..2218776 (-) 204 WP_000157345.1 DUF951 domain-containing protein -
  KU542_RS11215 (KU542_11215) - 2218806..2219687 (-) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  KU542_RS11220 (KU542_11220) spo0J 2219844..2220689 (-) 846 WP_225806540.1 ParB/RepB/Spo0J family partition protein Regulator
  KU542_RS11225 (KU542_11225) - 2221354..2222457 (+) 1104 WP_000655692.1 PLP-dependent transferase -
  KU542_RS11230 (KU542_11230) metC 2222454..2223614 (+) 1161 WP_000175846.1 cystathionine beta-lyase MetC -
  KU542_RS11235 (KU542_11235) - 2223583..2225424 (+) 1842 WP_000077318.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32856.80 Da        Isoelectric Point: 9.8693

>NTDB_id=510076 KU542_RS11220 WP_225806540.1 2219844..2220689(-) (spo0J) [Staphylococcus aureus strain 332]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SEIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGTKVDISIKKSVGKISFEFDSQEDFVRIIEQLNRRYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=510076 KU542_RS11220 WP_225806540.1 2219844..2220689(-) (spo0J) [Staphylococcus aureus strain 332]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGAATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGGAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAACGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTGCCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTCAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAGCAAGAACGACAGTTGCGA
GAACAGTATGGTACCAAAGTAGATATATCAATAAAAAAATCGGTTGGTAAAATCTCATTTGAGTTTGATTCACAAGAAGA
TTTTGTGAGAATAATTGAACAATTAAATCGTAGGTATGGTAAATAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(22-109)

HTH domain found in ParB protein (HTH_ParB)

(161-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381