Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   ST4078_RS02335 Genome accession   NZ_CP065477
Coordinates   424050..424493 (+) Length   147 a.a.
NCBI ID   WP_228614833.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4078     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 419050..429493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4078_RS02315 (ST4078_02290) - 419572..420324 (-) 753 WP_011680801.1 NUDIX domain-containing protein -
  ST4078_RS02320 (ST4078_02295) - 420388..421494 (-) 1107 WP_014608024.1 AAA family ATPase -
  ST4078_RS02325 (ST4078_02300) gdhA 421838..423190 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  ST4078_RS02330 (ST4078_02305) - 423449..423859 (+) 411 WP_011680804.1 peptide deformylase -
  ST4078_RS02335 (ST4078_02310) rcrR 424050..424493 (+) 444 WP_228614833.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  ST4078_RS02340 (ST4078_02315) rcrP 424497..426311 (+) 1815 WP_014608025.1 ABC transporter ATP-binding protein Regulator
  ST4078_RS02345 (ST4078_02320) rcrQ 426301..428079 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  ST4078_RS02350 (ST4078_02325) - 428235..428606 (+) 372 WP_224103327.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16978.36 Da        Isoelectric Point: 8.8203

>NTDB_id=509995 ST4078_RS02335 WP_228614833.1 424050..424493(+) (rcrR) [Streptococcus thermophilus strain 4078]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKCYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=509995 ST4078_RS02335 WP_228614833.1 424050..424493(+) (rcrR) [Streptococcus thermophilus strain 4078]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAATGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

55.319

95.918

0.531