Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I5M56_RS09875 Genome accession   NZ_CP065467
Coordinates   2029388..2029984 (-) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain Pinhead Larry     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2024388..2034984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5M56_RS09860 (I5M56_09860) helD 2024599..2026653 (-) 2055 WP_004201438.1 DNA helicase IV -
  I5M56_RS09865 (I5M56_09865) - 2026778..2027224 (+) 447 WP_004201437.1 YccF domain-containing protein -
  I5M56_RS09870 (I5M56_09870) yccS 2027242..2029377 (+) 2136 WP_108450569.1 YccS family putative transporter -
  I5M56_RS09875 (I5M56_09875) sxy/tfoX 2029388..2029984 (-) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  I5M56_RS09880 (I5M56_09880) - 2030002..2030307 (-) 306 WP_108450570.1 hypothetical protein -
  I5M56_RS09885 (I5M56_09885) sulA 2030333..2030842 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  I5M56_RS09890 (I5M56_09890) ompA 2031195..2032265 (+) 1071 WP_002898408.1 porin OmpA -
  I5M56_RS09895 (I5M56_09895) matP 2032468..2032920 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  I5M56_RS09900 (I5M56_09900) - 2033106..2034863 (+) 1758 WP_048323579.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=509877 I5M56_RS09875 WP_004201433.1 2029388..2029984(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain Pinhead Larry]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=509877 I5M56_RS09875 WP_004201433.1 2029388..2029984(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain Pinhead Larry]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5