Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   I5593_RS01565 Genome accession   NZ_CP065432
Coordinates   335459..336019 (+) Length   186 a.a.
NCBI ID   WP_100223341.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 17961     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330459..341019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5593_RS01540 (I5593_01540) - 332600..332730 (-) 131 Protein_293 hypothetical protein -
  I5593_RS01545 (I5593_01545) rpoZ 332769..333047 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  I5593_RS01550 (I5593_01550) gmk 333120..333749 (-) 630 WP_000015937.1 guanylate kinase -
  I5593_RS01555 (I5593_01555) ispH 333872..334822 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I5593_RS01560 (I5593_01560) fimU 334992..335465 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  I5593_RS01565 (I5593_01565) pilV 335459..336019 (+) 561 WP_100223341.1 type IV pilus modification protein PilV Machinery gene
  I5593_RS01570 (I5593_01570) pilW 336020..337021 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  I5593_RS01575 (I5593_01575) pilX 337018..337836 (+) 819 WP_000149371.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20188.20 Da        Isoelectric Point: 8.2247

>NTDB_id=509599 I5593_RS01565 WP_100223341.1 335459..336019(+) (pilV) [Acinetobacter baumannii strain ATCC 17961]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNLTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=509599 I5593_RS01565 WP_100223341.1 335459..336019(+) (pilV) [Acinetobacter baumannii strain ATCC 17961]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTTAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

99.462

100

0.995
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414