Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   I5V48_RS12315 Genome accession   NZ_CP065430
Coordinates   616045..616572 (+) Length   175 a.a.
NCBI ID   WP_374679402.1    Uniprot ID   -
Organism   Streptococcus suis strain YZDH1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 611045..621572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS03010 (I5V48_03010) - 611483..612010 (+) 528 WP_024378616.1 metallophosphoesterase -
  I5V48_RS03015 (I5V48_03015) cbpB 612007..612465 (+) 459 WP_024418592.1 cyclic-di-AMP-binding protein CbpB -
  I5V48_RS03020 (I5V48_03020) xerD 612462..613193 (+) 732 WP_044762042.1 site-specific tyrosine recombinase XerD -
  I5V48_RS03025 (I5V48_03025) - 613193..613912 (+) 720 WP_044768295.1 segregation/condensation protein A -
  I5V48_RS03030 (I5V48_03030) scpB 613896..614465 (+) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  I5V48_RS03035 (I5V48_03035) - 614455..615186 (+) 732 WP_024375836.1 pseudouridine synthase -
  I5V48_RS03040 (I5V48_03040) yidD 615186..615425 (+) 240 WP_024375837.1 membrane protein insertion efficiency factor YidD -
  I5V48_RS12315 oppA 616045..616572 (+) 528 WP_374679402.1 hypothetical protein Regulator
  I5V48_RS03045 (I5V48_03045) oppA 616590..617795 (+) 1206 WP_419992220.1 ABC transporter substrate-binding protein Regulator
  I5V48_RS03050 (I5V48_03050) - 618182..618727 (+) 546 WP_024398413.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  I5V48_RS03055 (I5V48_03055) - 619173..619730 (+) 558 WP_009910581.1 ECF transporter S component -
  I5V48_RS03060 (I5V48_03060) - 619755..620408 (+) 654 WP_044679893.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19049.59 Da        Isoelectric Point: 4.3768

>NTDB_id=509540 I5V48_RS12315 WP_374679402.1 616045..616572(+) (oppA) [Streptococcus suis strain YZDH1]
MKRMKNIALTGIGLLSIATLTACQTKEKTSDVALTFKSEVTHEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
GMVDISMFGYDSARTLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQVLRRLMIIR

Nucleotide


Download         Length: 528 bp        

>NTDB_id=509540 I5V48_RS12315 WP_374679402.1 616045..616572(+) (oppA) [Streptococcus suis strain YZDH1]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAACGTTAACAGCTTGTCAAACTAAAGA
AAAGACGAGTGATGTTGCTCTGACATTTAAATCAGAAGTGACACACGAAGGACAAACTATTGAAGGCGGAAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCGCCTTCGACCGGTATCTTAATTGATGAATTATCGCAGACGGCGGTAGACTCAACCTTTGCA
GGCATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGTACGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGACGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGCCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATT
GGCTTTGAAGAATTTCAGGTGTTAAGAAGGTTGATGATTATACGGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

57.576

94.286

0.543