Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I5V48_RS11040 Genome accession   NZ_CP065430
Coordinates   2319539..2320906 (-) Length   455 a.a.
NCBI ID   WP_024398839.1    Uniprot ID   A0A7T1LCA5
Organism   Streptococcus suis strain YZDH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2319539..2328697 2319539..2320906 within 0


Gene organization within MGE regions


Location: 2319539..2328697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS11040 (I5V48_11040) radA 2319539..2320906 (-) 1368 WP_024398839.1 DNA repair protein RadA Machinery gene
  I5V48_RS11045 (I5V48_11045) - 2320913..2321446 (-) 534 WP_043025219.1 histidine phosphatase family protein -
  I5V48_RS11050 (I5V48_11050) - 2321453..2321896 (-) 444 WP_002939955.1 dUTP diphosphatase -
  I5V48_RS11055 (I5V48_11055) rhuM 2321915..2322901 (-) 987 WP_043025220.1 RhuM family protein -
  I5V48_RS11060 (I5V48_11060) - 2322920..2323456 (-) 537 WP_153595832.1 hypothetical protein -
  I5V48_RS11065 (I5V48_11065) - 2323521..2325305 (-) 1785 WP_043025223.1 ABC transporter ATP-binding protein -
  I5V48_RS11070 (I5V48_11070) - 2325306..2327012 (-) 1707 WP_043025225.1 ABC transporter ATP-binding protein -
  I5V48_RS11075 (I5V48_11075) - 2327005..2327454 (-) 450 WP_043025226.1 MarR family winged helix-turn-helix transcriptional regulator -
  I5V48_RS11080 (I5V48_11080) - 2327681..2328697 (+) 1017 WP_043025227.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49857.35 Da        Isoelectric Point: 6.1911

>NTDB_id=509537 I5V48_RS11040 WP_024398839.1 2319539..2320906(-) (radA) [Streptococcus suis strain YZDH1]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVVGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=509537 I5V48_RS11040 WP_024398839.1 2319539..2320906(-) (radA) [Streptococcus suis strain YZDH1]
ATTATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGTCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTTAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAAACCCGTCCCATGAAACTCAATGAAGTTTCCTCTATTCAAGTGGCCCGCACCAAGACCAACATGGAGGAGTTCAAC
CGCGTCCTCGGTGGCGGTGTGGTACCGGGGAGTCTAGTTCTCATTGGTGGCGATCCAGGGATTGGGAAGTCCACCTTGCT
CCTGCAAGTATCGACCCAACTTTCGACTATTGGCACCGTCCTCTACGTGTCGGGGGAGGAGTCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCCATTCAGACCATTATGAGCCCTGACATCTCCAGCGTGCAAGG
ATCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTTATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGTACTCTGGCTGGACCTCGGACCTTGGAGCACATGGTGGACACCGTTCTTTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCTACCAATGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCTG
CGATTGTCGTGACCATGGAGGGCACTCGCCCAATCCTTGCAGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCAGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAGATTGGTCTGACAGGGGAA
ATCCGTCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCTAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACTGTTGTCGGCGTGACCACCATTGGCGAAGTTTTACAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T1LCA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622