Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   I5V48_RS09735 Genome accession   NZ_CP065430
Coordinates   2065526..2066260 (-) Length   244 a.a.
NCBI ID   WP_043025751.1    Uniprot ID   -
Organism   Streptococcus suis strain YZDH1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2060526..2071260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS09705 (I5V48_09705) rnpM 2060741..2061037 (-) 297 WP_043025744.1 RNase P modulator RnpM -
  I5V48_RS09710 (I5V48_09710) nusA 2061054..2062208 (-) 1155 WP_043025746.1 transcription termination factor NusA -
  I5V48_RS09715 (I5V48_09715) rimP 2062282..2062752 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  I5V48_RS09720 (I5V48_09720) trmB 2063010..2063648 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  I5V48_RS09725 (I5V48_09725) ccrZ 2063645..2064439 (-) 795 WP_043025748.1 cell cycle regulator CcrZ -
  I5V48_RS09730 (I5V48_09730) - 2064489..2065529 (-) 1041 WP_043025750.1 ABC transporter permease -
  I5V48_RS09735 (I5V48_09735) pptA 2065526..2066260 (-) 735 WP_043025751.1 ABC transporter ATP-binding protein Regulator
  I5V48_RS09740 (I5V48_09740) - 2066323..2066736 (+) 414 WP_043025752.1 HIT family protein -
  I5V48_RS09745 (I5V48_09745) - 2066738..2067067 (+) 330 WP_002942350.1 hypothetical protein -
  I5V48_RS09750 (I5V48_09750) - 2067435..2068628 (-) 1194 WP_024377877.1 LCP family protein -
  I5V48_RS09755 (I5V48_09755) - 2068625..2069152 (-) 528 WP_043025753.1 GNAT family N-acetyltransferase -
  I5V48_RS09760 (I5V48_09760) tsaE 2069145..2069585 (-) 441 WP_029177428.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26854.24 Da        Isoelectric Point: 4.4201

>NTDB_id=509531 I5V48_RS09735 WP_043025751.1 2065526..2066260(-) (pptA) [Streptococcus suis strain YZDH1]
MLEVKNVTGGYVNIPVLKDVSFTVEDGKLVGLIGLNGAGKSTTIKEIIGLLPPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQIAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=509531 I5V48_RS09735 WP_043025751.1 2065526..2066260(-) (pptA) [Streptococcus suis strain YZDH1]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TAAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGCCCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGTACTTCCATTCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAATCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.895

97.951

0.734
  pptA Streptococcus thermophilus LMD-9

73.222

97.951

0.717