Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   I5V48_RS01210 Genome accession   NZ_CP065430
Coordinates   247181..247894 (+) Length   237 a.a.
NCBI ID   WP_024380213.1    Uniprot ID   A0A0Z8IMN0
Organism   Streptococcus suis strain YZDH1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 242181..252894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS01195 (I5V48_01195) - 242545..242907 (-) 363 WP_043027001.1 iron chaperone -
  I5V48_RS01200 (I5V48_01200) treC 242976..244601 (-) 1626 WP_043025942.1 alpha,alpha-phosphotrehalase -
  I5V48_RS01205 (I5V48_01205) treP 244952..246946 (-) 1995 WP_197315079.1 PTS system trehalose-specific EIIBC component -
  I5V48_RS01210 (I5V48_01210) treR 247181..247894 (+) 714 WP_024380213.1 trehalose operon repressor Regulator
  I5V48_RS01215 (I5V48_01215) - 247952..248263 (+) 312 WP_024406827.1 hypothetical protein -
  I5V48_RS01220 (I5V48_01220) - 248260..248808 (+) 549 WP_029175774.1 CvpA family protein -
  I5V48_RS01225 (I5V48_01225) - 248964..251297 (+) 2334 WP_043027046.1 endonuclease MutS2 -
  I5V48_RS01230 (I5V48_01230) - 251321..251974 (+) 654 WP_043027045.1 GNAT family N-acetyltransferase -
  I5V48_RS01235 (I5V48_01235) trxA 252498..252812 (+) 315 WP_043027044.1 thioredoxin -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27213.11 Da        Isoelectric Point: 6.7419

>NTDB_id=509506 I5V48_RS01210 WP_024380213.1 247181..247894(+) (treR) [Streptococcus suis strain YZDH1]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQELYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTSREERDLMQIQDDYLVLIKSRVYLGDTRQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=509506 I5V48_RS01210 WP_024380213.1 247181..247894(+) (treR) [Streptococcus suis strain YZDH1]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTCCAGGAACTCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAGCCGAGAAGA
ACGAGATTTGATGCAGATTCAGGATGATTATCTGGTGTTGATAAAATCCAGGGTCTACTTAGGAGATACGCGACAATTTC
AATACACTGAAAGTAAGCACAAGATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8IMN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515