Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   I5776_RS20475 Genome accession   NZ_CP065425
Coordinates   4126596..4127546 (-) Length   316 a.a.
NCBI ID   WP_108072072.1    Uniprot ID   -
Organism   Heyndrickxia vini strain JCM 19841     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4121596..4132546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5776_RS20450 (I5776_20440) - 4122441..4123391 (-) 951 WP_202778318.1 alpha-L-glutamate ligase -
  I5776_RS20455 (I5776_20445) - 4123384..4123521 (-) 138 WP_160331433.1 hypothetical protein -
  I5776_RS20460 (I5776_20450) - 4123791..4124744 (-) 954 WP_202780884.1 siderophore ABC transporter substrate-binding protein -
  I5776_RS20465 (I5776_20455) - 4124901..4125659 (-) 759 WP_066230592.1 ABC transporter ATP-binding protein -
  I5776_RS20470 (I5776_20460) - 4125656..4126603 (-) 948 WP_202778319.1 iron chelate uptake ABC transporter family permease subunit -
  I5776_RS20475 (I5776_20465) ceuB 4126596..4127546 (-) 951 WP_108072072.1 ABC transporter permease Machinery gene
  I5776_RS20480 (I5776_20470) - 4127900..4128436 (+) 537 WP_202778320.1 shikimate kinase -
  I5776_RS20485 (I5776_20475) - 4128463..4128792 (-) 330 WP_066230601.1 potassium channel family protein -
  I5776_RS20490 (I5776_20480) - 4129413..4130135 (-) 723 WP_202778321.1 amino acid ABC transporter ATP-binding protein -
  I5776_RS20495 (I5776_20485) - 4130132..4130785 (-) 654 WP_202778322.1 amino acid ABC transporter permease -
  I5776_RS20500 (I5776_20490) - 4131169..4131978 (-) 810 WP_202778323.1 basic amino acid ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34699.97 Da        Isoelectric Point: 9.8569

>NTDB_id=509473 I5776_RS20475 WP_108072072.1 4126596..4127546(-) (ceuB) [Heyndrickxia vini strain JCM 19841]
MKKVVLIIAFIVLSVISLFVGVKNITPLDIFHLSEEQRDILLISRFPRLVSLILAGVSMSVCGLIMQQLSRNKFVSPTTA
GTMDSARLGILVSLILFSSAGMMEKMLMASIFALAGTFLFMNILGKIKFKDAIFIPLVGLMFGNIISSITTFFAYKHDLI
QSISSWLQGDFSMVMSGRYEMIYISIPLVILAYLFANKFTIAGMGEDFSVNLGLNYKLVVNIGLIIVALSTTSVLLTVGT
IPFLGLVVPNIVSIYNGDNLKKNLFQTALLGAVFLLFCDILGRIIIYPYEIPIGLTVGVIGSGIFLYLLMRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=509473 I5776_RS20475 WP_108072072.1 4126596..4127546(-) (ceuB) [Heyndrickxia vini strain JCM 19841]
ATGAAAAAAGTCGTTTTAATAATTGCATTTATTGTTTTATCCGTCATTTCATTATTTGTCGGAGTTAAAAATATTACACC
ATTGGACATCTTTCATTTATCCGAGGAACAACGAGATATTTTATTGATCAGTCGCTTTCCAAGGCTTGTGAGTCTCATTT
TGGCGGGAGTCAGCATGAGTGTTTGCGGGTTAATTATGCAGCAGTTGTCTCGAAATAAATTTGTTTCCCCAACGACTGCA
GGAACGATGGATTCAGCAAGATTAGGGATACTTGTTTCTTTAATCCTATTTTCATCGGCAGGTATGATGGAAAAAATGTT
GATGGCATCCATTTTTGCTTTAGCAGGTACATTTTTATTTATGAATATCCTTGGCAAGATTAAATTTAAGGATGCTATTT
TCATTCCACTAGTCGGATTGATGTTTGGGAATATCATAAGTTCCATCACAACATTCTTTGCCTATAAGCATGATTTGATC
CAAAGCATTTCTTCTTGGCTACAAGGGGATTTCTCCATGGTTATGTCGGGAAGATATGAAATGATTTATATTAGTATCCC
ACTTGTCATTCTTGCGTATTTATTTGCGAATAAATTTACGATAGCAGGCATGGGTGAGGATTTCTCAGTGAATCTAGGCT
TGAATTATAAGCTAGTAGTAAATATCGGTTTAATTATTGTGGCACTGTCTACTACATCCGTTCTTTTGACGGTAGGTACA
ATTCCTTTTCTAGGATTAGTCGTTCCGAATATCGTTTCCATTTATAACGGCGATAACTTAAAGAAAAACCTATTTCAAAC
AGCCTTGTTAGGTGCCGTGTTCTTACTGTTTTGTGATATTTTAGGCAGAATCATTATTTATCCATACGAAATTCCAATTG
GATTAACTGTTGGGGTCATAGGAAGCGGTATTTTTCTTTACTTGCTCATGAGGAGAAAGGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.09

98.734

0.554