Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   I5776_RS16180 Genome accession   NZ_CP065425
Coordinates   3225763..3226557 (-) Length   264 a.a.
NCBI ID   WP_202777374.1    Uniprot ID   -
Organism   Heyndrickxia vini strain JCM 19841     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3220763..3231557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5776_RS16160 (I5776_16155) mutY 3221030..3222124 (-) 1095 WP_202777372.1 A/G-specific adenine glycosylase -
  I5776_RS16165 (I5776_16160) - 3222440..3223420 (+) 981 WP_202777373.1 metal-dependent hydrolase -
  I5776_RS16170 (I5776_16165) - 3223781..3223942 (+) 162 WP_107920310.1 small, acid-soluble spore protein K -
  I5776_RS16175 (I5776_16170) - 3225407..3225703 (-) 297 WP_202780828.1 YfhH family protein -
  I5776_RS16180 (I5776_16175) recX 3225763..3226557 (-) 795 WP_202777374.1 recombination regulator RecX Regulator
  I5776_RS16185 (I5776_16180) - 3226670..3226792 (+) 123 WP_084347375.1 YfhE family protein -
  I5776_RS16190 (I5776_16185) - 3227275..3227460 (+) 186 WP_066226432.1 YfhD family protein -
  I5776_RS16195 (I5776_16190) trpA 3227480..3228274 (-) 795 WP_202777375.1 tryptophan synthase subunit alpha -
  I5776_RS16200 (I5776_16195) trpB 3228277..3229473 (-) 1197 WP_202777376.1 tryptophan synthase subunit beta -
  I5776_RS16205 (I5776_16200) - 3229470..3230096 (-) 627 WP_202777377.1 phosphoribosylanthranilate isomerase -
  I5776_RS16210 (I5776_16205) trpC 3230102..3230893 (-) 792 WP_202777378.1 indole-3-glycerol phosphate synthase TrpC -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31276.69 Da        Isoelectric Point: 6.0817

>NTDB_id=509467 I5776_RS16180 WP_202777374.1 3225763..3226557(-) (recX) [Heyndrickxia vini strain JCM 19841]
MPIITKISIQKNNSERYNIFLDGEYAFSVDEEVLARFQLTKGKELSDLDISEIDYEDDIRKGVNTAIHYLSYRMRSEKEV
RDYLKQKEINEMVIQEVIHKLYNLKYLNDLEFAVAYVRTQMNTTKKGPGTIKMELYEKGISDNQIDQALQEYSKEQQIDH
AKALLEKTIKQNKKLSEKSLKQKLDQTLLRKGFDIDTIHLAMDEIDFKKDESEEWNAIVVQGEKAHRKLQKYSGYEYEQK
MKQTLYRKGFPIELIEKFLQEYSL

Nucleotide


Download         Length: 795 bp        

>NTDB_id=509467 I5776_RS16180 WP_202777374.1 3225763..3226557(-) (recX) [Heyndrickxia vini strain JCM 19841]
ATGCCGATAATAACGAAAATTTCTATCCAAAAAAATAATAGTGAACGGTACAATATTTTTCTCGATGGCGAATATGCGTT
TAGTGTGGACGAAGAGGTGCTCGCGCGTTTTCAATTAACGAAAGGCAAAGAATTATCTGACCTTGACATTTCAGAAATTG
ATTATGAAGATGATATTCGAAAAGGTGTAAATACAGCGATACACTATCTTTCTTATCGGATGCGATCTGAAAAGGAAGTA
AGAGATTATTTGAAGCAAAAAGAGATCAATGAAATGGTCATCCAAGAAGTTATACATAAGCTTTATAATTTGAAGTATTT
AAATGATCTTGAATTTGCTGTTGCATATGTGAGAACACAAATGAATACAACGAAAAAAGGGCCAGGCACGATTAAAATGG
AATTATACGAAAAAGGAATAAGTGATAACCAAATTGATCAAGCATTACAGGAATATTCGAAAGAACAGCAAATTGACCAC
GCAAAGGCATTACTTGAAAAAACAATCAAGCAAAACAAAAAGCTTTCTGAAAAAAGTTTAAAACAAAAACTGGACCAAAC
TTTATTACGAAAAGGCTTTGATATCGATACCATTCATTTAGCGATGGACGAAATTGATTTTAAAAAAGATGAATCTGAAG
AGTGGAATGCTATTGTTGTGCAAGGGGAGAAAGCACATAGAAAACTGCAAAAATATAGTGGCTATGAGTATGAGCAAAAA
ATGAAGCAAACCTTGTATCGAAAAGGATTCCCAATAGAACTAATCGAGAAATTTCTTCAAGAATATAGTCTATAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

54.406

98.864

0.538