Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I5776_RS14150 Genome accession   NZ_CP065425
Coordinates   2820548..2822365 (-) Length   605 a.a.
NCBI ID   WP_202777028.1    Uniprot ID   -
Organism   Heyndrickxia vini strain JCM 19841     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2815548..2827365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5776_RS14120 (I5776_14115) - 2815704..2816498 (-) 795 WP_202780807.1 NAD kinase -
  I5776_RS14125 (I5776_14120) - 2816538..2817182 (-) 645 WP_202777024.1 GTP pyrophosphokinase family protein -
  I5776_RS14130 (I5776_14125) - 2817335..2817952 (+) 618 WP_202777025.1 CYTH domain-containing protein -
  I5776_RS14135 (I5776_14130) - 2817930..2818547 (+) 618 WP_202777026.1 lytic transglycosylase domain-containing protein -
  I5776_RS14140 (I5776_14135) - 2818710..2819111 (+) 402 WP_202777027.1 globin -
  I5776_RS14145 (I5776_14140) - 2819108..2819977 (+) 870 WP_246483796.1 ClpXP adapter SpxH family protein -
  I5776_RS14150 (I5776_14145) pepF 2820548..2822365 (-) 1818 WP_202777028.1 oligoendopeptidase F Regulator
  I5776_RS14155 (I5776_14150) - 2822521..2823708 (-) 1188 WP_202777029.1 competence protein CoiA family protein -
  I5776_RS14160 (I5776_14155) mecA 2823808..2824467 (-) 660 WP_202777030.1 adaptor protein MecA -
  I5776_RS14165 (I5776_14160) spxA 2824843..2825238 (-) 396 WP_202777031.1 transcriptional regulator SpxA -
  I5776_RS14170 (I5776_14165) trpS 2826010..2826999 (+) 990 WP_202777032.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69493.07 Da        Isoelectric Point: 4.8679

>NTDB_id=509458 I5776_RS14150 WP_202777028.1 2820548..2822365(-) (pepF) [Heyndrickxia vini strain JCM 19841]
MTTGTSTKSLPNRNEVTEELTWRLEDIFPSDDVWAKEFKDVKILLPKADQFKGKLGESADQLYEALKFQDEISERLGKLY
TYAHMRNDQDTGNSFYQGQESKMRSLLAEAGSVFAYLVPEILSIEENKLNGFIDEKSELKLYKHVLEQLNLQRPHVLSAD
QEALLAQASEVMDASSNTFGMLNNADLEFPSIKDEDGEEVQITHGRYSRFLESSDQRVRKEAFEKVYETYGNFRNTFAST
LSGQVKRDNFNAKVRKYDSARHAALSANNIPESVYDNLVDTVNKNLHLLHKYIKLRKKVLGVKELHMYDLYTPLVKDVEM
KIPYNDAKEMVLKGLAPLGEEYLDILKEGFENRWVDVVENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKNQPFTYGDYSIFVAEVASTCNEALLNDYLLKTIDDEKKRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKEQ
NGEALTAELLTKEYYDLNKKYFGEEDIVIDEQIGLEWSRIPHFYYNYYVYQYATGFSAATALSAQILEEGKPAVERYIGF
LSAGSSDYPIEVLKKAGVDMTSSSPVEEALKVFEEKLNELESLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=509458 I5776_RS14150 WP_202777028.1 2820548..2822365(-) (pepF) [Heyndrickxia vini strain JCM 19841]
ATGACTACTGGAACATCTACTAAATCACTTCCCAATCGTAATGAAGTGACTGAAGAGTTAACTTGGAGATTGGAAGATAT
ATTTCCAAGCGATGATGTATGGGCGAAGGAATTTAAAGATGTAAAGATATTATTACCAAAAGCTGACCAATTCAAAGGGA
AGCTAGGAGAAAGTGCTGATCAATTATATGAGGCACTGAAATTTCAAGATGAAATATCCGAAAGATTAGGAAAGTTGTAT
ACATACGCCCATATGCGCAATGATCAAGATACCGGAAATTCCTTTTATCAAGGTCAAGAAAGCAAAATGAGAAGTTTATT
AGCGGAGGCTGGCAGTGTATTTGCCTATTTAGTACCTGAAATATTGTCGATTGAAGAAAATAAATTAAATGGCTTTATTG
ATGAAAAAAGCGAGTTGAAATTGTATAAGCACGTATTAGAACAATTAAATCTTCAGCGTCCACATGTTCTATCTGCTGAT
CAAGAAGCACTGCTTGCTCAAGCTTCTGAAGTAATGGATGCATCCAGTAATACATTTGGAATGCTGAATAATGCTGATCT
TGAATTTCCATCTATTAAAGACGAGGATGGAGAAGAAGTTCAAATTACTCATGGGCGCTACTCTCGATTTTTAGAGAGCT
CAGACCAAAGAGTAAGAAAAGAAGCATTTGAGAAAGTGTATGAAACATATGGGAATTTTCGAAATACGTTTGCTAGTACA
TTAAGCGGGCAAGTGAAAAGGGATAATTTCAATGCAAAAGTTCGTAAATATGATTCTGCAAGACATGCTGCACTTTCAGC
AAACAATATTCCCGAAAGTGTTTACGATAATCTTGTGGACACGGTTAATAAAAATCTCCATCTTCTACACAAATACATTA
AACTTCGTAAAAAAGTTCTTGGGGTTAAGGAATTGCATATGTATGATCTATATACTCCACTAGTAAAAGATGTGGAAATG
AAAATTCCTTATAATGATGCAAAAGAGATGGTTCTAAAAGGCCTTGCACCGCTTGGTGAAGAATATTTAGACATTTTGAA
AGAAGGCTTTGAAAATCGCTGGGTAGATGTTGTTGAAAATAAAGGAAAAAGAAGTGGGGCCTATTCATCTGGTGCATATG
GTACAAATCCGTATATTTTGATGAACTGGCAAGATAATGTAAATAATCTTTTTACTTTAGCACATGAGTTTGGCCATAGT
GTTCACAGTTATTATACGAGGAAAAACCAACCGTTTACCTATGGTGATTACTCGATATTTGTAGCGGAAGTTGCATCTAC
ATGTAATGAGGCTTTATTAAATGATTATTTGCTTAAAACGATTGATGATGAAAAGAAAAGAATTTATTTATTAAACCATT
ATTTAGAGGGATTCCGCGGAACCGTTTTCCGTCAAACGATGTTTGCCGAATTCGAGCATTTAATTCACCAAAAAGAACAA
AACGGTGAAGCATTAACTGCAGAATTATTAACGAAAGAATATTATGATCTAAATAAAAAATATTTTGGGGAAGAGGATAT
TGTTATAGATGAACAAATTGGTTTGGAGTGGTCCAGAATACCTCACTTCTACTACAATTATTATGTTTATCAATATGCAA
CAGGATTTAGTGCGGCGACTGCACTAAGTGCGCAAATTCTTGAAGAAGGAAAACCTGCTGTTGAACGCTATATCGGGTTC
TTGTCGGCCGGAAGTTCTGATTACCCAATTGAAGTATTGAAAAAGGCGGGCGTGGATATGACATCGTCAAGTCCAGTTGA
AGAAGCACTTAAAGTATTTGAAGAGAAATTAAATGAACTTGAAAGCTTATTATCATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.748

98.347

0.489