Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I5776_RS08460 Genome accession   NZ_CP065425
Coordinates   1699535..1701247 (+) Length   570 a.a.
NCBI ID   WP_202780184.1    Uniprot ID   -
Organism   Heyndrickxia vini strain JCM 19841     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1694535..1706247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5776_RS08435 (I5776_08430) xseB 1694913..1695137 (+) 225 WP_202780180.1 exodeoxyribonuclease VII small subunit -
  I5776_RS08440 (I5776_08435) - 1695167..1696027 (+) 861 WP_202780741.1 polyprenyl synthetase family protein -
  I5776_RS08445 (I5776_08440) dxs 1696150..1698045 (+) 1896 WP_202780181.1 1-deoxy-D-xylulose-5-phosphate synthase -
  I5776_RS08450 (I5776_08445) - 1698042..1698884 (+) 843 WP_202780182.1 TlyA family RNA methyltransferase -
  I5776_RS08455 (I5776_08450) argR 1699038..1699487 (+) 450 WP_202780183.1 transcriptional regulator ArgR -
  I5776_RS08460 (I5776_08455) recN 1699535..1701247 (+) 1713 WP_202780184.1 DNA repair protein RecN Machinery gene
  I5776_RS08465 (I5776_08460) spoIVB 1701393..1702682 (+) 1290 WP_202780185.1 SpoIVB peptidase -
  I5776_RS08470 (I5776_08465) spo0A 1702947..1703735 (+) 789 WP_202780186.1 sporulation transcription factor Spo0A -
  I5776_RS08475 (I5776_08470) - 1703823..1704152 (-) 330 WP_202780187.1 hypothetical protein -
  I5776_RS08480 (I5776_08475) - 1704320..1705060 (+) 741 WP_202780188.1 glycerophosphodiester phosphodiesterase -
  I5776_RS08485 (I5776_08480) - 1705214..1705456 (-) 243 WP_202780189.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 65107.61 Da        Isoelectric Point: 5.0879

>NTDB_id=509444 I5776_RS08460 WP_202780184.1 1699535..1701247(+) (recN) [Heyndrickxia vini strain JCM 19841]
MLQELSIKNFAIIDELYLSIEKGLTVLTGETGAGKSIIIDAVNLLVGGRGSSEFVRHGEKKAEIEGLFILNDESHPCYNR
ANEFGIDIEEGMIILHRDISITGKSVCRINGKLVTISILREIGSTLIDIHGQHEHQELMNETHHLRLLDQYGGREIKTAL
DNYRVIYKQYEQIASKLKGLSENEQQMAHRLDLIQFQLQEIQKANLQIDEDIILMEEKKKLMNFERLFDSLKTSYGALQG
EQKGLDWIGLVMSQLETTAEIEPDYEPLLESVSNCFYILEDAASTIRNDLDSLEFNPERLNEIESRLNEMNQLKRKYGGT
LQDILEYSSKIEEEIETIINRESHIDKLQITLAQLQKDLYLEAKQLSDLRKKWSKKLMNAIHSELKQLYMDKTVFEVKFI
HSVEEYKNEMDPPFRKDGLDFVEFYISTNPGEPLKPLNKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVA
QAIGEKIYQVSEHSQVLCISHLPQVAAMADTHLFIMKETIDGRTRTKVKTLKLEEKINEVSRMIAGVEITDKALEHAQEL
LQLAYAKKFT

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=509444 I5776_RS08460 WP_202780184.1 1699535..1701247(+) (recN) [Heyndrickxia vini strain JCM 19841]
TTGTTACAAGAATTATCGATCAAAAATTTTGCCATCATTGATGAACTATATTTGTCTATAGAAAAAGGATTAACGGTGTT
AACAGGAGAAACCGGTGCGGGAAAATCTATTATCATTGATGCAGTTAATTTATTAGTTGGTGGAAGAGGATCATCAGAAT
TCGTTCGCCACGGTGAAAAAAAGGCAGAAATCGAAGGCCTTTTTATATTAAATGACGAATCACATCCATGTTATAATCGA
GCAAATGAATTTGGAATTGACATTGAAGAAGGAATGATTATCCTTCATCGTGATATTTCAATTACCGGAAAAAGCGTTTG
CAGAATTAATGGGAAATTAGTAACCATTTCGATTTTACGTGAAATTGGTAGCACTCTAATTGATATACACGGTCAGCATG
AACACCAAGAATTAATGAATGAAACTCATCATTTAAGGCTTCTTGATCAATATGGAGGCAGGGAAATTAAGACTGCACTT
GATAATTATCGTGTAATATACAAACAATATGAGCAAATTGCTTCTAAGCTTAAAGGATTGAGTGAAAATGAACAGCAAAT
GGCTCACCGATTAGATCTTATTCAATTTCAACTGCAAGAAATCCAAAAAGCAAATCTTCAAATAGACGAAGACATCATCC
TCATGGAAGAAAAGAAAAAATTAATGAATTTTGAACGGCTTTTCGATTCATTAAAAACAAGTTACGGCGCATTACAAGGC
GAACAAAAGGGGCTTGATTGGATAGGTCTCGTTATGAGTCAGTTAGAAACGACTGCCGAAATTGAGCCGGATTATGAGCC
ATTATTAGAATCCGTTTCAAATTGTTTTTATATACTTGAAGATGCGGCAAGTACAATCCGCAATGATTTAGATAGTTTAG
AGTTTAACCCTGAACGTTTAAATGAAATTGAAAGCCGCCTTAACGAAATGAACCAATTAAAAAGAAAATATGGCGGCACA
CTGCAAGATATATTGGAATACAGTTCAAAGATCGAGGAAGAAATTGAAACGATTATTAACCGTGAAAGCCATATTGATAA
ATTACAAATAACGTTAGCTCAACTTCAAAAAGATTTATATTTAGAAGCCAAACAATTAAGTGATTTAAGAAAAAAATGGT
CTAAAAAATTAATGAATGCAATTCATAGTGAATTAAAGCAATTATATATGGATAAAACAGTATTTGAAGTGAAATTCATT
CATTCTGTTGAGGAATATAAAAATGAAATGGACCCTCCATTTCGAAAAGATGGGTTGGATTTCGTTGAATTTTATATATC
AACCAACCCTGGTGAACCTTTAAAACCATTAAATAAAGTTGCTTCCGGTGGTGAATTATCGAGAATGATGCTTGCGCTGA
AAACGATTTTTTCAAAACATCAGGGCATTACTTCAATCATTTTCGATGAGGTAGATACAGGTGTAAGCGGCCGAGTTGCT
CAAGCAATTGGTGAAAAGATATATCAAGTTTCTGAGCATTCGCAAGTCCTATGTATTTCCCATCTACCACAAGTTGCAGC
TATGGCAGATACACATTTGTTTATCATGAAAGAAACCATTGATGGACGAACACGGACAAAGGTGAAAACTTTGAAATTGG
AAGAAAAAATTAATGAAGTTAGTCGCATGATTGCAGGTGTCGAAATAACCGATAAAGCTTTAGAACACGCTCAAGAATTG
TTGCAACTTGCCTATGCAAAAAAATTTACTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.862

100

0.607